PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03522.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 243aa    MW: 25496.7 Da    PI: 6.6245
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03522.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-1185131354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h e Er+RR+++N +f  Lr  +P+       +++Ka+ L  A +YI +L
  Pahal.B03522.1  85 ASHVESERQRREKLNCRFCDLRAAVPTV-----SRMDKASLLADAAQYIAEL 131
                     6899***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.01582131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1585144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-985131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-1586143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.36E-1086136No hitNo description
SMARTSM003532.3E-1088137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDEHLSPSSC SRPAPFSFSE ASCTILELPS FEVPEQWLLA DVVAAGENEN DDIAAAPSPS  60
APAPAPAKRR GRKPGPRPGA GAAAASHVES ERQRREKLNC RFCDLRAAVP TVSRMDKASL  120
LADAAQYIAE LHARVAQLEA DARHHAAVAR WEPASAGGDA AAAVGGELYV RKVGRDAAVV  180
RVTSGARHAR AWLLGALRSL ELQVQHACVS RARGVPTQDV LVDVPAGATA LQDDDDLRAA  240
LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1786141863Transcription factor MYC2
5gnj_B2e-1786141863Transcription factor MYC2
5gnj_E2e-1786141863Transcription factor MYC2
5gnj_F2e-1786141863Transcription factor MYC2
5gnj_G2e-1786141863Transcription factor MYC2
5gnj_I2e-1786141863Transcription factor MYC2
5gnj_M2e-1786141863Transcription factor MYC2
5gnj_N2e-1786141863Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801647.11e-123transcription factor MYC2-like
TrEMBLA0A2T8KR901e-135A0A2T8KR90_9POAL; Uncharacterized protein
STRINGPavir.J27331.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.17e-22bHLH family protein