PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03551.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 254aa    MW: 26366.2 Da    PI: 7.0771
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03551.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51e-1555105153
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                     + ++GVr++   grWv+e+r+p ++g  +r +lg++  ae Aa+a++aa+++l
  Pahal.B03551.1  55 PVFRGVRRRGAAGRWVCEVRVPGNRG--ARLWLGTYVAAEAAARAHDAAMLAL 105
                     579******************95554..**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-1155105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-2356119IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1456118IPR016177DNA-binding domain
SMARTSM003801.2E-1456123IPR001471AP2/ERF domain
PROSITE profilePS5103219.79656117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDMGRLEHST SSTSSTSASS SSSGQNKASP SSSPSLQAPK KRPAGRTKFR ETRHPVFRGV  60
RRRGAAGRWV CEVRVPGNRG ARLWLGTYVA AEAAARAHDA AMLALGRGRS GAGLNFPDSA  120
WRLALPPPSA LPSLDDARRA ALEAVADFQR RSGAAGSAAA VDEVTSRSAS APPPLQDISG  180
SPATSLEHVP AKADETAALD GGAFEPDWFG GMDLDTYYAS LAEGLLMEPP PPPAAWEHGD  240
FGDGGADVAL WSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4504811e-125AF450481.1 Zea mays DREB-like protein (DREB1A) mRNA, complete cds.
GenBankAY9647181e-125AY964718.1 Zea mays cultivar Qi319 CBF3-like protein (CBF3) mRNA, complete cds.
GenBankAY9669021e-125AY966902.1 Zea mays CRT/DRE binding factor (CBF3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803652.11e-179dehydration-responsive element-binding protein 1H-like
SwissprotA2Z3882e-57DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H
SwissprotQ0J0902e-57DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H
TrEMBLA0A3L6QVE31e-134A0A3L6QVE3_PANMI; Dehydration-responsive element-binding protein 1H-like
STRINGSi030869m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.16e-19C-repeat-binding factor 4