PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03552.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 236aa    MW: 25166 Da    PI: 4.7443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03552.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.2e-1854105154
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                     + ++GVr++ + grWv+e+r+p   g +  r +lg+f+tae Aa+a++aa++++ 
  Pahal.B03552.1  54 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEAAARAHDAAMLAIA 105
                     579******************9...6445**********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1354106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-2855116IPR001471AP2/ERF domain
PROSITE profilePS5103221.08755114IPR001471AP2/ERF domain
SMARTSM003806.7E-2055120IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-1955116IPR016177DNA-binding domain
CDDcd000181.49E-1156116No hitNo description
PRINTSPR003673.8E-55667IPR001471AP2/ERF domain
PRINTSPR003673.8E-58096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MCPIKKEMSA ESSSPCSWAS PSTSSPEQEH HRTVWTAPPK KPAGRTKFRE TRHPVFRGVR  60
RRGNAGRWVC EVRVPGRRGC RLWLGTFDTA EAAARAHDAA MLAIAGPGAC LNFADSAWLL  120
AVPASYASLA EVRHAVAEAV EGFQRREALS VSEDDAASSS APSSPSSVEL DGASTDGEES  180
SPAAEDSAFD LDVFNDMSWD VYYASMAQAM LMEPPSAVPA FGDDAVVGDV PLWSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803653.11e-167dehydration-responsive element-binding protein 1A-like
SwissprotA2Z3891e-100DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
TrEMBLA0A2T8KRD11e-166A0A2T8KRD1_9POAL; Uncharacterized protein
STRINGPavir.J03893.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-30C-repeat/DRE binding factor 2