PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03556.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 223aa    MW: 23366.1 Da    PI: 9.0517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03556.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-202373256
             AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                    ++ GVr+++ +grWvAeI+d      +r r +lg+f+taeeAa+a+++a+++l+ge
  Pahal.B03556.1 23 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAARALRGE 73
                    589******.7*********....4456**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.2572380IPR001471AP2/ERF domain
SMARTSM003803.1E-312386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-272381IPR001471AP2/ERF domain
PfamPF008479.5E-152373IPR001471AP2/ERF domain
CDDcd000184.92E-262381No hitNo description
SuperFamilySSF541717.85E-202481IPR016177DNA-binding domain
PRINTSPR003673.0E-82435IPR001471AP2/ERF domain
PRINTSPR003673.0E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAAQEGVSTA AAATPAAACR GRRFVGVRQR PSGRWVAEIK DSAQRVRLWL GTFDTAEEAA  60
RAYDEAARAL RGEGTRTNFA DRARRCGGAA RARLSRNLQH VMARGAAAGR ATACARGVGE  120
QFALAAVFRD WQQPAAPQQA EAAGAAKHAV QPSFVVPRRT EAPLSPALGA GDPWGDAAEL  180
MCAEERSFKV SSSVIVPPSF SASTSSESES ESFGLEDFLA TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1423791471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801648.11e-155ethylene-responsive transcription factor ERF055-like
TrEMBLA0A2S3H1S11e-153A0A2S3H1S1_9POAL; Uncharacterized protein
STRINGPavir.Ba01277.1.p1e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-16related to AP2 11