PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03603.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SRS
Protein Properties Length: 328aa    MW: 33293.8 Da    PI: 8.9418
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03603.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702224.62e-691032533153
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 
                      g++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaakrrerqqqla ++++aaa++a a + r+ +++ +++ ++++ ++ss++++
  Pahal.B03603.1 103 GGGVSCQDCGNQAKKDCAHQRCRTCCKSRGFSCSTHVKSTWVPAAKRRERQQQLAVLAASAAATTAGAGPSRDPTKRPRARLSVATPTTSSGDQQ 197
                     5789******************************************************999999988888888888899999************* PP

          DUF702  98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     + + ++++P+evsseavfrcvr++ vd++e+e+aYqt+vsigGhvfkGiL+d G++
  Pahal.B03603.1 198 MVTVAERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTTVSIGGHVFKGILHDVGPH 253
                     ******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.2E-64105253IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.5E-26107149IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.0E-23204252IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAGFPLGGGG HSHSHSRDAP APSVPPVHPS DAAAAASFLY AARAGAGLQL WQQHEQQQQQ  60
HPFYGSNIIR FSDDPPGAAP SLTGAASSSS SRGTRGGGGS GGGGGVSCQD CGNQAKKDCA  120
HQRCRTCCKS RGFSCSTHVK STWVPAAKRR ERQQQLAVLA ASAAATTAGA GPSRDPTKRP  180
RARLSVATPT TSSGDQQMVT VAERFPREVS SEAVFRCVRL GPVDQAEAEV AYQTTVSIGG  240
HVFKGILHDV GPHSLGTPGG SGGAIEYHFR HAGDGSPPST AAAGDVGGGG VANVIVSSAV  300
VMDPYPTPGP YGAFPAGAAF FHGHPRQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0334110.0BT033411.1 Zea mays full-length cDNA clone ZM_BFb0154O01 mRNA, complete cds.
GenBankBT0876180.0BT087618.1 Zea mays full-length cDNA clone ZM_BFb0133L22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803795.10.0protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A2S3H1W40.0A0A2S3H1W4_9POAL; Uncharacterized protein
STRINGGRMZM2G080295_P011e-148(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-48Lateral root primordium (LRP) protein-related