PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03609.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SRS
Protein Properties Length: 224aa    MW: 23412.2 Da    PI: 10.5066
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03609.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70288.81.2e-27431894153
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstW..vpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 
                     g ++ qdC   ak +Cah RCR CC  rgf C  hv+      pa   +e++q++ +  s+aa +  ++ +kr+r      ++ +++ ++ss ++
  Pahal.B03609.1  43 GIIRYQDCWLLAKAGCAHPRCRHCCGGRGFACPAHVRPSCsdTPAFPCSEHHQRTLT--STAAVAPLRNPHKRPRPR-PPPRAPAATPTTSSVDQ 134
                     55778********************************65422788888887555544..445555566677777765.33444444555566666 PP

          DUF702  97 kkeletsslP.eevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     +++    s+  eevs +avfr+vr++    + +e+aY+++v+i G vf+G+Lyd G  
  Pahal.B03609.1 135 PTTAAPGSFArEEVSLDAVFRRVRLGP---DGAEVAYHATVTICGRVFRGVLYDVGSR 189
                     6666666665278***********986...5689*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.6E-3045188IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.3E-11147187IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MHHASDAASF LSAATSADGS LEQQRQLVRG AASSSPRGTG AAGIIRYQDC WLLAKAGCAH  60
PRCRHCCGGR GFACPAHVRP SCSDTPAFPC SEHHQRTLTS TAAVAPLRNP HKRPRPRPPP  120
RAPAATPTTS SVDQPTTAAP GSFAREEVSL DAVFRRVRLG PDGAEVAYHA TVTICGRVFR  180
GVLYDVGSRR RRRSSTASTD TAGSSDGSSR STAGGGLDLT LRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111115KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801651.11e-157protein SHORT INTERNODES-like
TrEMBLA0A2S3H1Q51e-156A0A2S3H1Q5_9POAL; Uncharacterized protein
STRINGPavir.Ba01243.1.p1e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2105377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18120.13e-14SHI-related sequence 4