PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03774.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 236aa    MW: 25599.9 Da    PI: 8.3638
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03774.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-05628123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k   r  nL+ H+r H
  Pahal.B03774.1  6 FVCEVCHKGLQREQNLQLHQRGH 28
                    89*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-5428IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.58E-5428No hitNo description
PROSITE profilePS501579.702628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MATKPFVCEV CHKGLQREQN LQLHQRGHNL PWKLKQKDPK EARRRVYLCP EPTCVHHNPS  60
RALGDLTGIK KHYCPSTTLK CGKCDKLYAV EADWKAHSQT CGTREYRCDC GELFSRSVQF  120
LRPFPKDTFA AHRSFCNMAP RRESAEVTPV EADLNVSSGS ISLGLSGVAT QIHGLADQAG  180
QSSLAAAAAA VQFDHIMPSS SSGPSMLRSQ APSSSSFLLG GKAPSPAQDF SEDGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-1879150768Zinc finger protein JACKDAW
5b3h_F4e-1879150768Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548651e-111AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957598.11e-104protein indeterminate-domain 5, chloroplastic
RefseqXP_004957599.11e-104protein indeterminate-domain 5, chloroplastic
RefseqXP_004957600.11e-104protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-64IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A3L6QQP51e-110A0A3L6QQP5_PANMI; Protein indeterminate-domain 5, chloroplastic-like
STRINGSi029540m1e-103(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.27e-66indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]