PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03967.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 884aa    MW: 99347.4 Da    PI: 9.0438
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03967.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.42e-5141174117
            CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                       +rw +++ei+a+L+n++++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++ee+p+f rrc
  Pahal.B03967.2   4 AGTRWFRPNEIYAVLANHARFKVHAQPVDKPASGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYYARGEEDPNFFRRC 98 
                     478******************************************************************************************** PP

            CG-1  99 ywlLeeelekivlvhylev 117
                     ywlL++ele+ivlvhy+++
  Pahal.B03967.2  99 YWLLDKELERIVLVHYRQT 117
                     ****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143772.2481123IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-601118IPR005559CG-1 DNA-binding domain
PfamPF038592.1E-444116IPR005559CG-1 DNA-binding domain
SuperFamilySSF812966.44E-11350436IPR014756Immunoglobulin E-set
SuperFamilySSF484036.22E-18495639IPR020683Ankyrin repeat-containing domain
CDDcd002041.17E-16527635No hitNo description
Gene3DG3DSA:1.25.40.202.0E-18534642IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.298543647IPR020683Ankyrin repeat-containing domain
PfamPF127962.6E-8549639IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.808576608IPR002110Ankyrin repeat
SMARTSM002486.3E-6576605IPR002110Ankyrin repeat
SMARTSM00248560615644IPR002110Ankyrin repeat
SuperFamilySSF525409.82E-11690792IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.24741763IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.334742771IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055744762IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0019764786IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.53765789IPR000048IQ motif, EF-hand binding site
PfamPF006127.0E-4766786IPR000048IQ motif, EF-hand binding site
SMARTSM000157.3845867IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.249847875IPR000048IQ motif, EF-hand binding site
PfamPF006120.12848867IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MAEAGTRWFR PNEIYAVLAN HARFKVHAQP VDKPASGTVV LYDRKVVRNF RKDGHNWKKK  60
KDGKTVQEAH EKLKIGNEEK VHVYYARGEE DPNFFRRCYW LLDKELERIV LVHYRQTSEE  120
NAIPPPHIEA EVAEVPPINI IHYTSPIIST DSASARTELS SCAAAAAPEE INSHGGGAIS  180
CETDDHDSSL ESFWADLLES SMKNDTSVRG GSLTPNQQTN DGMRDSGNSI LNTNARSNAI  240
FSSPANVVSE AYAANPGLNQ VSESYYGALK HQVNQSPSLL TSDLDSQSKP HANSIIKTLV  300
DGNMPSDVPA RQNSLGLWKY LDDDITCLVN NPSSAIPITR PVIDEMPFHI IEISSEWAYC  360
TDDTKVLVVG YFLDNYKHLS GANLYCVIGE QCVTADIVQT GVYRFMARPH VPGRVNLYLT  420
LDGKTPISEV LSFEYRRMLG SSDDDEPKKS KLQMQMRLAR LLFSTSQKKI PPKFLVEGSR  480
VSNLLSASTE KEWMNLFKYV TDSKGTNIPA TESLLELVLR NKLQEWLVEK IIEGHKSTDR  540
DDLGQGPIHL CSFLGYTWAI RLFSLSGFSL DFRDSSGWTA LHWAAYYGRE KMVAALLSAG  600
ANPSLVTDPT HDDPGGHTAA DIAARQGFDG LAAYLAEKGL TAHFEAMSLS KDKKSTSRTQ  660
SIKQISKEFE NLTEQELCLR ESLAAYRNAA DAASNIQAAL RERTLKLQTK AIQSANPEIE  720
AATIVAAMRI QHAFRNYNRK KMMRAAARIQ SHFRTWQMRR NFMNMRRQAI KIQAAYRGHQ  780
VRRQYRKVIW SVGVVEKAIL RWRKKRKGLR GIATGMPVAM STDTEAASTA EEDYYQVGRQ  840
QAENRFNRSV VRVQALFRSH RAQQEYRRMK VAHEEAKVEF SQN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800750.10.0calmodulin-binding transcription activator CBT isoform X1
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A2S3H2F30.0A0A2S3H2F3_9POAL; Uncharacterized protein
STRINGPavir.Ba00948.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators