PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04035.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 219aa    MW: 21960.8 Da    PI: 9.9314
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04035.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.62.4e-4086163178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cq+e+C+adl+ea +y+rrhkvC++hskapvvlv+gl+qrfCqqCsrfhelsefDe++rsCr rLa+hnerrrk++a
  Pahal.B04035.1  86 RCQAERCNADLNEAGQYNRRHKVCQTHSKAPVVLVAGLRQRFCQQCSRFHELSEFDEARRSCRLRLAGHNERRRKSSA 163
                     6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.2E-3382148IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.84684161IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.05E-3785166IPR004333Transcription factor, SBP-box
PfamPF031106.9E-3187160IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDRKDKSRRG SSSSAAAAAS MAALAAAAAA GEGSSSGSGS ADGALPPLGE EEDQKPPKLA  60
AVAGASSSSP VPARRGAAAG AGGGPRCQAE RCNADLNEAG QYNRRHKVCQ THSKAPVVLV  120
AGLRQRFCQQ CSRFHELSEF DEARRSCRLR LAGHNERRRK SSADTHGHGG GGGGGGSSNG  180
GAGGSSSSNG GAGDGCRHAD QDGRGHQGNP PPNHFQIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-3578160284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654459e-92BT065445.2 Zea mays full-length cDNA clone ZM_BFb0161D05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804566.11e-151squamosa promoter-binding-like protein 13
SwissprotQ6Z4611e-50SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLA0A2S3H2K91e-150A0A2S3H2K9_9POAL; Uncharacterized protein
STRINGPavir.Bb02800.1.p4e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.11e-35squamosa promoter binding protein-like 3