PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04035.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 166aa    MW: 16842.9 Da    PI: 9.0046
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04035.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP71.41.6e-2286134149
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                     +Cq+e+C+adl+ea +y+rrhkvC++hskapvvlv+gl+qrfCqqCsr 
  Pahal.B04035.2  86 RCQAERCNADLNEAGQYNRRHKVCQTHSKAPVVLVAGLRQRFCQQCSRA 134
                     6**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.0E-2282134IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.14484161IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-2185134IPR004333Transcription factor, SBP-box
PfamPF031105.2E-1787135IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MDRKDKSRRG SSSSAAAAAS MAALAAAAAA GEGSSSGSGS ADGALPPLGE EEDQKPPKLA  60
AVAGASSSSP VPARRGAAAG AGGGPRCQAE RCNADLNEAG QYNRRHKVCQ THSKAPVVLV  120
AGLRQRFCQQ CSRASEHKLQ VASTCSIWMC HAGLDFPDRI KSLHC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-1778140262squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654457e-55BT065445.2 Zea mays full-length cDNA clone ZM_BFb0161D05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804566.11e-85squamosa promoter-binding-like protein 13
TrEMBLA0A2S3H2X71e-113A0A2S3H2X7_9POAL; Uncharacterized protein
STRINGSi032170m7e-36(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.23e-18squamosa promoter binding protein-like 8