PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04038.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 308aa    MW: 32878.6 Da    PI: 10.7715
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04038.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.26.2e-40204280278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cqve+C+adl++a++y+rrhkvCe hskap+vlv+gl+qrfCqqCsrfhel efD +k+sCrrrLa+hn+rrrk++a
  Pahal.B04038.1 204 CQVERCAADLNDARRYYRRHKVCEPHSKAPAVLVAGLRQRFCQQCSRFHELLEFDGDKHSCRRRLAGHNARRRKSSA 280
                     **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.0E-33199265IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.812201278IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.76E-37202282IPR004333Transcription factor, SBP-box
PfamPF031101.0E-31204277IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MARYYVSRSL QIHRTIMPGP ADLCFFDKDT SKNGRVYRHT HTPSAQAQVY EHTCSYTNPL  60
YVVRGPHVRP ASTHTAPTFI SLSTSPRHHP SCHRPPLMRA KQASKRGSRA PPPPRQLSSI  120
ASSPDGAAMD RKGPSSSAPA SMAALAAAAA ASQPSSGHAN GALSPHAEED EKPATLAAAG  180
GGGASSSSDP VAARRGAAGG GPSCQVERCA ADLNDARRYY RRHKVCEPHS KAPAVLVAGL  240
RQRFCQQCSR FHELLEFDGD KHSCRRRLAG HNARRRKSSA DRHGGGGGDQ DGRSHPGNPS  300
RNHFQIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-32196277184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00359DAPTransfer from AT3G15270Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0966267e-78FP096626.1 Phyllostachys edulis cDNA clone: bphylf027p18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799709.11e-145squamosa promoter-binding-like protein 13
TrEMBLA0A2S3H2I30.0A0A2S3H2I3_9POAL; Uncharacterized protein
STRINGPavir.Ba01146.1.p1e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.19e-26squamosa promoter binding protein-like 5