PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04226.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 460aa    MW: 52214.7 Da    PI: 7.2036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04226.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.99.1e-128894582373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cAea+s++   +  +l+++ +  +s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s e l+++k++++++P++kf+++
  Pahal.B04226.2  89 KQLLTKCAEALSEERIDEFLKLVQQARGVVSITGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPE---SNELLSYMKILYNICPYFKFGYM 180
                     689*****************************************************************9...99********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI ea+ +e+++HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e l  +g+ L+++ ee+++p+ef++l     + +
  Pahal.B04226.2 181 AANGAIAEALRNEDKIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLDLVGKMLKSMSEEFRIPLEFTPLPGVYATHV 275
                     ******************************************************999999**************************988899999 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + e L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf+e+++yysa+f+s++a+lpr+ +eri+
  Pahal.B04226.2 276 TKEILDIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFSETMDYYSAMFESIDANLPRDRKERIN 370
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp+pls+++++ ++ ll+ ++ d y++ee++g+++lgWk+r+L+s+SaW
  Pahal.B04226.2 371 VEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFKPYPLSSYVNSVIRKLLACYS-DKYTLEEKDGAMLLGWKNRKLISASAW 458
                     *********************************************************9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.75662440IPR005202Transcription factor GRAS
PfamPF035143.1E-12589458IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MQHALREIET VLMAPDADDA ANNTKHEFEE HKPTQLMRQR SRTWSHESRQ PSPGVVRTQF  60
GSGYPTASYE FRPEKRQREL REDPQNMVKQ LLTKCAEALS EERIDEFLKL VQQARGVVSI  120
TGEPIQRLGA YLLEGLVARH GNSGTNIYRA LKCREPESNE LLSYMKILYN ICPYFKFGYM  180
AANGAIAEAL RNEDKIHIID FQIAQGTQWI TLIQALAARP GGPPHVRITG IDDPVSEYAR  240
GEGLDLVGKM LKSMSEEFRI PLEFTPLPGV YATHVTKEIL DIRPGEALAV NFTLQLHHTP  300
DESVDVNNPR DGLLRMVKGL SPKVTTLVEQ ESHTNTTPFL MRFSETMDYY SAMFESIDAN  360
LPRDRKERIN VEQHCLAKDI VNIIACEGKD RVERHELLGK WKSRLTMAGF KPYPLSSYVN  420
SVIRKLLACY SDKYTLEEKD GAMLLGWKNR KLISASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-69724583378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278600.0KJ727860.1 Zea mays clone pUT5952 GRAS transcription factor (GRAS49) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800435.10.0chitin-inducible gibberellin-responsive protein 1 isoform X2
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2S3H3090.0A0A2S3H309_9POAL; Uncharacterized protein
STRINGPavir.Bb02923.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]