PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04327.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 966aa    MW: 105642 Da    PI: 8.447
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04327.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18461560198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  Pahal.B04327.1 461 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDASGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGK 553
                     89**************************555566778***************9989999999***9.********************987.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     l +++++
  Pahal.B04327.1 554 LIMGFRK 560
                     7777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-30457563IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-19458560IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-22459560No hitNo description
PROSITE profilePS5086311.279461562IPR003340B3 DNA binding domain
PfamPF023621.1E-15461560IPR003340B3 DNA binding domain
SMARTSM010193.6E-21461561IPR003340B3 DNA binding domain
PROSITE profilePS5105013.981716766IPR011124Zinc finger, CW-type
PfamPF074963.7E-11721763IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
MSSPQAPPPP PPPPPPPAPA PPAAALAPVS ATPISVQPPP IQPKPPPPQQ QPQPPGPVSG  60
PQPPTPAQLL NLGPQPPMYR GPICWNSYCK DPDPNSFGRR GWKVRSGPPF SVYADLCGRC  120
YSQFEQGIYC ETFHSEEGGW RNCESCGRRV HCGCIVSIHK YQLRDAGGVD CAKCARNTRT  180
AMAPPSPVWA SPMHNSQNVA ERKDIPVKSW RPPAGQISSQ WRQTNLWSVS SIQSDLQQRL  240
AFEFDRPSGS EKLLPGRTFI HAQDRKFDDM HDRPTTPAGM NHIMRERDAN GHGQPTNMDP  300
AYSYTLYHRD GSHPNNLHDP SHHGGENDSL SSRKVAMPDA CTSVDTGFKL DSHHPSILKD  360
DPPSLSVGLA SNFASQNGPK DHIRIAPAQQ QAQMASSSLQ KQFYSHTVSG YNEFQAQMRN  420
GRPRMDAKAR SQLLPRYWPR ITDQELQHLS SDSNSVITPL FEKMLSASDA GRIGRLVLPK  480
KCAEAYFPPI SQPEGLPLKV QDASGKEWIF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG  540
DTVTFSRIDP EGKLIMGFRK ATNISSEQEQ TTKPANGAPA TSEANGKVSA PDPSPNAAVS  600
RQNKVNTETK SSSPVEQTAA SKIEKDGLTQ KEGPGTASSS PGPAKRKAAN LTPKNKRLRM  660
ESEESMELKI TWEEAQELLR PPPKAPNIVV VDGHEFEEYE EPPILGRKTY FVADQSGSNH  720
QWAQCENCSK WRKLPVDALM PSKWTCSDNK WDSERSSCEA AQEISMEELA ELIPIKSGPG  780
GAKKPKARVE GEAIDASDGL DTLANLAILG EGEALPSQPT TKHPRHRPGC SCIVCIQPPS  840
GKGPKHKQTC TCNVCMTVRR RFRTLMLRRE KRASTDSPRK KDTGQSSERD RQGGSGQLAT  900
NASATSSSQK AADTKANAPE DMAVDHKVTS SPVKNHIDLN IQPERDDEQS PKSGAAGALN  960
RDNPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-644395682131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548470.0BT054847.1 Zea mays full-length cDNA clone ZM_BFb0181D20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800002.10.0B3 domain-containing protein Os07g0563300-like isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2S3H3N10.0A0A2S3H3N1_9POAL; Uncharacterized protein
STRINGPavir.Bb03074.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-144HSI2-like 1