PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B04397.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

YABBY

Protein Properties

Length: 166aa MW: 17564.1 Da PI: 7.684

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B04397.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	134.9	1e-41	15	162	7	168
YABBY 7 seqvCyvqCnfCntilavsvPsts...lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 +e++ vqCnfC til+v vP +k+v+v+CG C +lsv+l + + ++e l+es+ v+ +s +++ e +t Pahal.B04397.1 15 PERLGCVQCNFCATILLVGVPCCGgglQLKTVAVQCGSCGGILSVTLPPSPPAASVELPLQESG---------VDPPPRHSDESSGEDRETAA-- 98 799999*************97533379*************999887777666544443.........33322222222222222222.. PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 e++ p vi+PPe++qr Psayn+fikeei+rika++P+i+h+eafsaa+knWah+P+i Pahal.B04397.1 99 ---AVAENHAF---PAVIKPPERKQRTPSAYNCFIKEEIRRIKATDPNITHKEAFSAASKNWAHLPRIQQ 162 ...22334444...579************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.4E-43	15	161	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-8	106	159	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.1E-5	111	161	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MASAARHPCF GGLLPERLGC VQCNFCATIL LVGVPCCGGG LQLKTVAVQC GSCGGILSVT 60 LPPSPPAASV ELPLQESGVD PPPRHSDESS GEDRETAAAV AENHAFPAVI KPPERKQRTP 120 SAYNCFIKEE IRRIKATDPN ITHKEAFSAA SKNWAHLPRI QQKEN*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801746.1	1e-117	protein YABBY 7-like
Swissprot	A2PZN8	1e-60	YAB7_ORYSJ; Protein YABBY 7
TrEMBL	A0A2S3H3E8	1e-117	A0A2S3H3E8_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EXL6	1e-117	A0A2T7EXL6_9POAL; Uncharacterized protein
STRING	Pavir.Ba00601.1.p	1e-108	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13625	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	3e-29	YABBY family protein

Link Out ? help Back to Top
Phytozome	Pahal.B04397.1