PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04498.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 605aa    MW: 64871.9 Da    PI: 6.7071
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04498.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32222279260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  Pahal.B04498.1 222 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGRHNHPK 279
                     8****************************************.***************85 PP
2WRKY107.56.8e-34395453159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  Pahal.B04498.1 395 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 453
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-28212280IPR003657WRKY domain
PROSITE profilePS5081123.801216280IPR003657WRKY domain
SuperFamilySSF1182908.89E-25220280IPR003657WRKY domain
SMARTSM007743.6E-35221279IPR003657WRKY domain
PfamPF031062.1E-24222278IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-38380455IPR003657WRKY domain
SuperFamilySSF1182905.75E-30387455IPR003657WRKY domain
PROSITE profilePS5081138.297390455IPR003657WRKY domain
SMARTSM007746.5E-40395454IPR003657WRKY domain
PfamPF031061.3E-26396453IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MADSPNPSSG GSPEKPVLTD RRVAALAGAG AGARYKAMSP ARLPISREPC LTIPAGFSPG  60
ALLESPVLLN NFKVEPSPTT GTLSMAAIIN KSTHLDILPS PRDKSTGSGH EDGDSRDFEF  120
KPHLSCQPAG PAVNNPNHHD TSMQNHTSSS SNLMTENKSL CSRESIHQTA NISSVLNQPV  180
AIVGPSDNMP AEVSTSERNQ MNSSENAAQE TQTENVAEKS AEDGYNWRKY GQKHVKGSEN  240
PRSYYKCTHP NCEVKKLLER SLDGQITEVV YKGRHNHPKP QPNRRLAAGA VPSNQGEERY  300
DGATPVEDKP SNIYPNLCNQ VHSAGMIDPV PGPASDDDGD GGGGRPYPGD DANEDDDLDS  360
KRRKMESAGI DAALMGKPNR EPRVVVQTVS EVDILDDGYR WRKYGQKVVK GNPNPRSYYK  420
CTHTGCPVRK HVERASHDPK SVITTYEGKH NHEVPASRNA SHEMSAAPMK PAGHPINSSM  480
PGLGGMMRAC DARAFTNQYS QAAESDTISL DLGVGISPNH SDATNQMQPS VPEPMQYQMQ  540
HMAPVYGSMG FPGMPVPTVP GNAASSAYGS REEKGNEGFT FKAAPLDRSA NLCYSSAGNL  600
VMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36222456878Probable WRKY transcription factor 4
2lex_A4e-36222456878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639790.0BT063979.1 Zea mays full-length cDNA clone ZM_BFc0127M09 mRNA, complete cds.
GenBankBT0674340.0BT067434.1 Zea mays full-length cDNA clone ZM_BFc0043E01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801894.10.0WRKY transcription factor SUSIBA2-like isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A2S3H4150.0A0A2S3H415_9POAL; Uncharacterized protein
STRINGSi029245m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-119WRKY family protein