PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04526.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 586aa    MW: 63186.8 Da    PI: 5.3415
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04526.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.31.3e-961805842374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfsh 95 
                      +lLlecA+av+++d +++q+l++ l+elasp+gd  q+la yf+++L arl+ s++++ ++l++ +++++ s +++  + l f+e+sP+  f+h
  Pahal.B04526.1 180 SQLLLECARAVAARDSQRVQQLMWMLNELASPYGDVEQKLANYFLQGLFARLTASGPRTLRTLAAASDRNT-SFDSTRRTALrFQELSPWSSFGH 273
                     589************************************************************99888744.44444444446************ PP

            GRAS  96 ltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfe 177
                     ++aN aIle++ ++       +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r++kfA+ +gvpf+
  Pahal.B04526.1 274 VAANGAILESFLEAaaassepQRFHILDLSNTFCTQWPTLLEALATRSaDDTPHLSITTVVSAAPSaptaaVQRVMREIGQRMEKFARLMGVPFS 368
                     *********987766667778999************************889***********988889999999********************* PP

            GRAS 178 fnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse.............sFl 254
                     f+++++  +l++l+l++L+++      a+aVn+v +l  ++  ++  +  rd++ + ++ l P+vv+vve+ead+   +              Fl
  Pahal.B04526.1 369 FRAVHHAgDLAELDLDALDLRDggaTTAVAVNCVNSLRGVV--PGGARR-RDAFTSSLRLLDPRVVTVVEEEADLvA-SdpdaseeggdteaAFL 459
                     ***97767**************888889************9..555555.99**********************954.448999*********** PP

            GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                     + f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et+++W +r+++aGF+pv++se++a+++++llr++  +g+
  Pahal.B04526.1 460 KVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYR-EGW 552
                     **********************************.********************************************************.888 PP

            GRAS 350 rveee.......sgslvlgWkdrpLvsvSaWr 374
                     ++ +         + ++l Wk++pLv++SaWr
  Pahal.B04526.1 553 SMRDAclddsatGAGVFLAWKEQPLVWASAWR 584
                     88844444455355566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.421153558IPR005202Transcription factor GRAS
PfamPF035144.6E-94180584IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MDTLFRLVSL QASEQQQQSA SYNSRSTTSS GSRSSSHQTN ASYNYYYHSN TSSGGGGQYY  60
YGQQHQHQQY YLEPYQQEEC GNAHHLYMDE DFSSSSSSRQ HFHSHGAAVQ PPTSSVATAP  120
TPPLSTSSTA AGAAHALFEA ADLSFPPDLN LDFSSPASSS GGGAASSAAV GGGGGGRWAS  180
QLLLECARAV AARDSQRVQQ LMWMLNELAS PYGDVEQKLA NYFLQGLFAR LTASGPRTLR  240
TLAAASDRNT SFDSTRRTAL RFQELSPWSS FGHVAANGAI LESFLEAAAA SSEPQRFHIL  300
DLSNTFCTQW PTLLEALATR SADDTPHLSI TTVVSAAPSA PTAAVQRVMR EIGQRMEKFA  360
RLMGVPFSFR AVHHAGDLAE LDLDALDLRD GGATTAVAVN CVNSLRGVVP GGARRRDAFT  420
SSLRLLDPRV VTVVEEEADL VASDPDASEE GGDTEAAFLK VFGEGLRFFS AYMDSLEESF  480
PKTSNERLAL ERGAGRAIVD LVSCPASESM ERRETAASWA RRMRSAGFSP VAFSEDVADD  540
VRSLLRRYRE GWSMRDACLD DSATGAGVFL AWKEQPLVWA SAWRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-16117558529420Protein SHORT-ROOT
5b3h_E1e-16117558529420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673280.0BT067328.1 Zea mays full-length cDNA clone ZM_BFc0012E13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799762.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A2S3H3S40.0A0A2S3H3S4_9POAL; Uncharacterized protein
TrEMBLA0A2T7EY250.0A0A2T7EY25_9POAL; Uncharacterized protein
STRINGSi029296m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-140GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]