PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04544.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 248aa    MW: 26660.3 Da    PI: 12.6089
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04544.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0006899121123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ Cgk++++   L  H  +H
  Pahal.B04544.1  99 YECSVCGKVYPSYQALGGHKTSH 121
                     99**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.73E-696124No hitNo description
PROSITE profilePS5015710.1899126IPR007087Zinc finger, C2H2
PfamPF139127.5E-1499123IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSLAMSPDAT LDVSSKPPVP PPSPPRVDSW ARGGRRSKRR AGSPGGGGGA EQSEEEYLAL  60
SLLMLSRGVR GDAAEDSGGV AASAKGAGAA AAKASQQGYE CSVCGKVYPS YQALGGHKTS  120
HRKPQTPPTA RRRRRPRPRR ATSRRPSAPA SRTRRRRCTS ARSASARSRR GRRWAGTSGC  180
TTRAAAPRAR TGSRPTRTPP PRPRPAQPMR LPCSGTSTST CRLRPQRPPR RRWRMPRARF  240
RRPSGRA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432380.0AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802618.12e-50zinc finger protein 36-like
TrEMBLA0A2T7EY281e-49A0A2T7EY28_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.14e-16C2H2 family protein