PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B04546.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 234aa MW: 23634.2 Da PI: 8.2651

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B04546.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.9	3.7e-29	21	122	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA r+ +Pv+Gavg++ +++++l+q+ Pahal.B04546.1 21 SCNGCRVLRKGCSEACVLRPCLqwiegAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVSGAVGLLGAGSWHLCQA 115 6*******************9999888899************************************************************* PP DUF260 91 kaelall 97 ++e++l+ Pahal.B04546.1 116 AVETVLR 122 *998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.721	20	126	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-25	21	120	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MRGGPPGCGR VAAAVVVPAM SCNGCRVLRK GCSEACVLRP CLQWIEGAEA QGHATVFVAK 60 FFGRAGLMSF LTAVPEPQRP AVFQSLLYEA AGRTINPVSG AVGLLGAGSW HLCQAAVETV 120 LRGGGIRPLP ELDGGLPAAD GRDPLALTAR RAVAGCSTFS AAKRAAARAN AGAPVAAYAF 180 PEPSCDLGLC LSPGSPPAPG ERRPGTPSLT SEESVTTTSG GGGREPELLN LFV*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243238	0.0	AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802506.1	1e-163	LOB domain-containing protein 37-like
Swissprot	Q9FN11	1e-67	LBD37_ARATH; LOB domain-containing protein 37
Swissprot	Q9SN23	1e-67	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2S3H3R5	1e-162	A0A2S3H3R5_9POAL; Uncharacterized protein
STRING	Pavir.Ba01055.1.p	1e-133	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-66	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Pahal.B04546.1

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]