PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04547.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 455aa    MW: 49215.2 Da    PI: 5.1431
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04547.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.81e-93614512373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl..fsevsPilk 92 
                     ++lL++cA+a++++d++l+q++L+ l+++a pdgd++qRl+a f+ AL ar +r   ++ + +a+++  +s   ++++++a++l  f++++P+++
  Pahal.B04547.1  61 EQLLVHCANAIEANDATLTQQILWVLNNIAPPDGDSNQRLTAAFLCALVARASRtgACKAVTAAVAAAVESAALHVHRFTAVELasFVDLTPWHR 155
                     79***************************************************943444555555444444444777777777789********* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl.. 181
                     f++ +aN aIleaveg   vH++ ++ ++++Q p+L++ LasR+egpp lR+T+ + + +        ++ e+g +L +fA++ +++++f+v+  
  Pahal.B04547.1 156 FGYTAANAAILEAVEGFPVVHVVELGTTHCMQIPTLIDMLASRAEGPPILRLTVADVAPNApppaLDMSYDELGAKLLNFARSRNMSMDFRVVtt 250
                     ******************************************************98866667877778899**********************66 PP

            GRAS 182 .....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           ++ +++l++++L ++  Eal+Vn+++ lh+++de++ + s       r+ +Lk +++l P++vvvve++ad ++++ + r+  a+++ +
  Pahal.B04547.1 251 spadaFTSLVDQLRVQQLVLDGTEALVVNCQMLLHTVPDETAGSVSlaqpvsLRTMLLKSLRTLDPNLVVVVEEDADFTAGDVVGRLRAAFNFLW 345
                     6655445556677888888888****************998777666657767999*************************************** PP

            GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                       +d++++ lp+ se+r+++E+e +g++++nv+a+eg +r er+e  ++W +r+++aGF++v+++e+aa ++k++l++++  g+ ++ e++ lvl
  Pahal.B04547.1 346 IPYDAVDTFLPKGSEQRRWYEAE-IGWKVENVLAQEGVDRLERQEDRARWDQRMRSAGFRAVAFGEEAAGEVKAMLNEHA-AGWGMKREDDDLVL 438
                     ***********************.********************************************************.889999******** PP

            GRAS 361 gWkdrpLvsvSaW 373
                     +Wk++++v++SaW
  Pahal.B04547.1 439 TWKGHNVVFASAW 451
                     ************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.01634433IPR005202Transcription factor GRAS
PfamPF035143.5E-9161451IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MMQFTHTAPP PPPLHPNGHG GLGLGLFLDV GAPRARPWPG SFPTPASKIS LGNLNSTSCM  60
EQLLVHCANA IEANDATLTQ QILWVLNNIA PPDGDSNQRL TAAFLCALVA RASRTGACKA  120
VTAAVAAAVE SAALHVHRFT AVELASFVDL TPWHRFGYTA ANAAILEAVE GFPVVHVVEL  180
GTTHCMQIPT LIDMLASRAE GPPILRLTVA DVAPNAPPPA LDMSYDELGA KLLNFARSRN  240
MSMDFRVVTT SPADAFTSLV DQLRVQQLVL DGTEALVVNC QMLLHTVPDE TAGSVSLAQP  300
VSLRTMLLKS LRTLDPNLVV VVEEDADFTA GDVVGRLRAA FNFLWIPYDA VDTFLPKGSE  360
QRRWYEAEIG WKVENVLAQE GVDRLERQED RARWDQRMRS AGFRAVAFGE EAAGEVKAML  420
NEHAAGWGMK REDDDLVLTW KGHNVVFASA WASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-543945166472Protein SHORT-ROOT
5b3h_B9e-553945112418Protein SHORT-ROOT
5b3h_E9e-553945112418Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432380.0AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803436.10.0scarecrow-like protein 32
SwissprotQ9SN221e-160SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A3L6QKE10.0A0A3L6QKE1_PANMI; Transcription factor containing protein, GRAS family
STRINGGRMZM2G097456_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-144GRAS family protein