PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04600.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 548aa    MW: 60579.5 Da    PI: 4.5145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04600.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-082351146
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     ll +a k+lG++ W+ Ia+ +  gRt++ +k+r+ +
   Pahal.B04600.4  2 LLCEAQKLLGNR-WTEIAKVVS-GRTDNAVKNRFST 35
                     6899********.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.818141IPR017930Myb domain
SuperFamilySSF466895.77E-8243IPR009057Homeodomain-like
CDDcd001671.74E-5236No hitNo description
Gene3DG3DSA:1.10.10.601.0E-9240IPR009057Homeodomain-like
PfamPF002491.3E-6235IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MLLCEAQKLL GNRWTEIAKV VSGRTDNAVK NRFSTLCKRR AKDDEPFQEN GTPCSNTNAK  60
RVLTKTGCVT PGAAGSSLPM KQISSDLKEN IVPNMILFGQ EKGTQQDARQ PLANISSNNQ  120
QNLNTVKSQN LVATTTKTLL GPEQHCVKQE GNFMKKDDPK VAILLQQADL LCSLATKINH  180
EDTSQSMDEA WQQLQHHLVK KEDNGMSENS GSGIASLLEE LDDLIVDPYE SKEEDEEKLR  240
EQNGQRQTDV ENMQCSDPSQ ASMEVTSNMA PDEMMEDHTV GNCKEVSSLC RYMLSGSMEP  300
CSGAKITASE NLSEVAEDRR LQQVESTSPV LTDFDDFIID PYENKEEDEQ NLRELNGQID  360
VHDHQSYCPS QATMEDNNLC RNVLSGSMEP SPGAEKAASE NLSEVAEKRR FQCMESTSPV  420
PTNFQTKEYG ETPVPENLNE VAEDSRLQRV EFTSPAHTLL RAKAGAETYA SPRIAVVAKD  480
SKLPSMEFTS PAHTVATFQP YADDMPTPKF TASERNFLLS VLELTSPGLR PETSQQPSCK  540
RALLNSL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799287.10.0transcription factor MYB124 isoform X4
TrEMBLA0A2S3H4520.0A0A2S3H452_9POAL; Uncharacterized protein
STRINGPavir.J36475.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.22e-45MYB family protein