PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04725.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 552aa    MW: 57529.9 Da    PI: 6.5857
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04725.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS185.53.7e-571565382374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn....sseelaalkl...fsevs 88 
                     ++lL  cA a+++g+l +aq+lL  l elas +g+p++Rlaa+ ++AL +rl +  ++  ++++++ + +  +     ++ l ++     f+evs
  Pahal.B04725.1 156 EQLLNPCAVAIEAGNLPRAQHLLYVLGELASFSGEPNHRLAAHGLRALMQRLPHaVGPAAAATVKMPSCECPTpvfsGVDPLLFRASlirFNEVS 250
                     689*************************************************99555555555543333322345654444443333589***** PP

            GRAS  89 PilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetgerLakfAe 170
                     P++ + +++aN aI +a++ +      ++ H++D ++s+G+QWp+Ll+aL+  p  + pps+R+T+ g++++       +        +L ++A+
  Pahal.B04725.1 251 PWFAVPNVLANAAIAQAAAAAgaatepRQFHVVDVGVSHGVQWPTLLEALTHVPrgSTPPSVRLTVGGPAAAPpvpfsASPPGYDCSPQLLRYAK 345
                     ****************99887667777788*********************76644889******9998766688888889999*********** PP

            GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyy 264
                     ++++++ +    a +l++l  + +r  pg +l+V+l+++l +        ++e+ +vL+ ++sl+P+++v++e ++   +++s + +f+  le+ 
  Pahal.B04725.1 346 SINLDLAIVQ--APSLDTL--HGIR-TPGQTLVVCLQFRLGHAT------ADEQVAVLRNIRSLNPELLVLAELDCGGrSDGSAASEFAARLEHL 429
                     ****999876..4555555..5553.46**********999987......333468*******************998899************** PP

            GRAS 265 salfdsleakl.preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...ees 355
                     ++++ds++a + +r+++er+++E+e     +  ++a+  ++  +     e W +rl +aGF++ +++ +a+++ k+llrk++  g+++     + 
  Pahal.B04725.1 430 WMFLDSTAAAFkGRDADERRVMEAE-----AGTALAATARWGAAVGGGREAWLARLAAAGFEETAFGGEAVETSKALLRKYD-GGWELVppsPSA 518
                     *******776514444666655555.....7777788888878899999*********************************.667777554557 PP

            GRAS 356 gslv.lgWkdrpLvsvSaWr 374
                     g++v l Wk++p+ ++S Wr
  Pahal.B04725.1 519 GAAVgLRWKGQPVSFCSLWR 538
                     78888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.701129515IPR005202Transcription factor GRAS
PfamPF035141.3E-54156538IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MSEERGDQEP AAATSSGASD WLDESIAFLA ADLDVGLGAY GWLQASAEEE QQQQGIDSMV  60
AEARPPPAIT LPQSGLGPVS TSVASSPVAS PQEFGQPRKR KSPQHSSQRS PVGSGGGGRG  120
SPELDRGGTS CNRKPSKKGS AKAGAASLGR DARWAEQLLN PCAVAIEAGN LPRAQHLLYV  180
LGELASFSGE PNHRLAAHGL RALMQRLPHA VGPAAAATVK MPSCECPTPV FSGVDPLLFR  240
ASLIRFNEVS PWFAVPNVLA NAAIAQAAAA AGAATEPRQF HVVDVGVSHG VQWPTLLEAL  300
THVPRGSTPP SVRLTVGGPA AAPPVPFSAS PPGYDCSPQL LRYAKSINLD LAIVQAPSLD  360
TLHGIRTPGQ TLVVCLQFRL GHATADEQVA VLRNIRSLNP ELLVLAELDC GGRSDGSAAS  420
EFAARLEHLW MFLDSTAAAF KGRDADERRV MEAEAGTALA ATARWGAAVG GGREAWLARL  480
AAAGFEETAF GGEAVETSKA LLRKYDGGWE LVPPSPSAGA AVGLRWKGQP VSFCSLWRPT  540
QASPELIWRG A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-2715154083475Protein SHORT-ROOT
5b3h_B7e-2815154029421Protein SHORT-ROOT
5b3h_E7e-2815154029421Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801770.10.0nodulation-signaling pathway 1 protein-like
TrEMBLA0A2S3H4830.0A0A2S3H483_9POAL; Uncharacterized protein
STRINGPavir.J40211.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.15e-70GRAS family protein