PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04920.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 310aa    MW: 32433.3 Da    PI: 6.8882
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04920.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-1860108355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Pahal.B04920.1  60 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 108
                     56******.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-2959122IPR001471AP2/ERF domain
PROSITE profilePS5103220.54759116IPR001471AP2/ERF domain
CDDcd000185.28E-2659115No hitNo description
SuperFamilySSF541714.64E-2060117IPR016177DNA-binding domain
PRINTSPR003671.1E-76071IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-2860116IPR001471AP2/ERF domain
PfamPF008472.6E-1162108IPR001471AP2/ERF domain
PRINTSPR003671.1E-78298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MNTRGSGSSS GGGGGNPTLM AFSEHPKPAS GQPQPSPPSS PSERPPAGRG RRRAQEPGRF  60
LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAQEAALAYD RAALSMKGAQ ARTNFVYTHA  120
AYNYPPFLAP FHAQPSSYAH APSSVQYGGH GHHGGAGAPH IGSYHHHYYY QASAAGSGAS  180
SSSGECSAPA AVDRADGTLL MDRNGHDFLF ASADDNSGYL SSVVPESCLR PRSSAAAVED  240
LRRYSDADAY GMGMGLREDV DDLAQMVAGF WGGSGGDADQ LCGFPSGSGD MVASSQGSDG  300
YSPLSFLSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-18561151171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269|PubMed:12835399, ECO:0000269|PubMed:14503923, ECO:0000269|PubMed:26744119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0363651e-145BT036365.1 Zea mays full-length cDNA clone ZM_BFb0108M21 mRNA, complete cds.
GenBankKJ7275471e-145KJ727547.1 Zea mays clone pUT5407 AP2-EREBP transcription factor (EREB151) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804267.10.0ethylene-responsive transcription factor FZP
SwissprotQ8H3Q11e-115FZP_ORYSJ; Ethylene-responsive transcription factor FZP
TrEMBLA0A2S3H4S70.0A0A2S3H4S7_9POAL; Uncharacterized protein
STRINGPavir.Ba00192.1.p1e-161(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105252838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-34ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu QH,Hoque MS,Dennis ES,Upadhyaya NM
    Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L).
    BMC Plant Biol., 2003. 3: p. 6
    [PMID:14503923]
  3. Liu HQ, et al.
    [Towards the positional cloning of a spikelet identity gene frizzle panicle (FZP) in rice (Oryza sativa L.)].
    Yi Chuan Xue Bao, 2003. 30(9): p. 811-6
    [PMID:14577371]
  4. Jang S, et al.
    The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice.
    Plant Mol. Biol., 2003. 53(3): p. 357-69
    [PMID:14750524]
  5. Rossini L, et al.
    Candidate genes for barley mutants involved in plant architecture: an in silico approach.
    Theor. Appl. Genet., 2006. 112(6): p. 1073-85
    [PMID:16501940]
  6. Yi G, et al.
    Morphological and molecular characterization of a new frizzy panicle mutant, "fzp-9(t)", in rice (Oryza sativa L.).
    Hereditas, 2005. 142(2005): p. 92-7
    [PMID:16970618]
  7. Duan Y, et al.
    Genetic analysis and mapping of gene fzp(t) controlling spikelet differentiation in rice.
    Sci. China, C, Life Sci., 2003. 46(3): p. 328-34
    [PMID:18763148]
  8. Routledge AP, et al.
    Magnaporthe grisea interactions with the model grass Brachypodium distachyon closely resemble those with rice (Oryza sativa).
    Mol. Plant Pathol., 2004. 5(4): p. 253-65
    [PMID:20565594]
  9. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  10. Derbyshire P,Byrne ME
    MORE SPIKELETS1 is required for spikelet fate in the inflorescence of Brachypodium.
    Plant Physiol., 2013. 161(3): p. 1291-302
    [PMID:23355632]
  11. Poursarebani N, et al.
    The Genetic Basis of Composite Spike Form in Barley and 'Miracle-Wheat'.
    Genetics, 2015. 201(1): p. 155-65
    [PMID:26156223]
  12. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]
  13. Ma X, et al.
    Genomic structure analysis of a set of Oryza nivara introgression lines and identification of yield-associated QTLs using whole-genome resequencing.
    Sci Rep, 2016. 6: p. 27425
    [PMID:27251022]