 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.B04928.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C3H |
| Protein Properties |
Length: 238aa MW: 26069.7 Da PI: 8.4002 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.B04928.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 17.6 | 7e-06 | 61 | 82 | 8 | 26 |
GGGGTS...--TTTTT-SS-SS CS
zf-CCCH 8 ffartG...tCkyGdrCkFaHg 26
+ artG C +G rC++aHg
Pahal.B04928.1 61 HLARTGaapSCVRGLRCRYAHG 82
568999999************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MADAFWVYVY KVQRCPQVGN HDWTACPYAH KGERARRRDP RNFSYLAVTC PAFRESQQQQ 60
HLARTGAAPS CVRGLRCRYA HGVFELWLHP ARFRTVMCEG GLRCPRRVCF FAHFPAELRG 120
ENDPVPLDGL PPLPPRVPRA PPSPAAPLSF PRRVDLAMQA MPGKVRLYGG AAGESQSPSA 180
PAAAAEPVAA PVPALPPPPA SPDDKEEPAV QNSRRASEDG SEDGDYPHFD LIKDMVL*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC243226 | 0.0 | AC243226.1 Panicum virgatum clone PV_ABa006-K10, complete sequence. |
