PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04939.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 366aa    MW: 38391.9 Da    PI: 4.9668
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04939.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.41.9e-051856537
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                     C+ +   ++  +C+ ++  lC  C  + H g       H
  Pahal.B04939.1 18 ACDFCAGLPAVVYCRADSARLCLPCDRHVH-GantvssrH 56
                    6***************************99.434555555 PP
2CCT64.43.4e-22322363344
             CCT   3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       ++RYkeKrk+R+F+K+irYesRKa+A+ R R+KGrF+k+ 
  Pahal.B04939.1 322 TVISRYKEKRKNRRFDKQIRYESRKARADGRLRIKGRFAKSG 363
                     5689***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.5E-101461IPR000315B-box-type zinc finger
PROSITE profilePS501199.671461IPR000315B-box-type zinc finger
CDDcd000211.11E-61961No hitNo description
PROSITE profilePS5101714.932320362IPR010402CCT domain
PfamPF062031.4E-16322362IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSVAGAADKE MPPVAAAACD FCAGLPAVVY CRADSARLCL PCDRHVHGAN TVSSRHARAP  60
LCDACRAAAA AFRRGATGFL CANCDFEEER QRDGDPRPLH DRGAVEGYAG CPSIAELAAI  120
LGVGGCEKAA AAAGDGWWPA WEDPQVLRLE DVIVPTTSCH GLQPLLTPSS PKLGELAKSE  180
AAAMAFSEAE PADGEQLPSW ASSEYGIGDG DFGAFDTDAC HEAASMAVPS CEEAWIATDG  240
NGACREAHEQ APAPASSLAE PCLLSSFVDM SEICPSMTLG GSVDVDNGSN KRDAAEAAPQ  300
QQASPAPAKK GGYDVAYPDR GTVISRYKEK RKNRRFDKQI RYESRKARAD GRLRIKGRFA  360
KSGEA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432260.0AC243226.1 Panicum virgatum clone PV_ABa006-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799929.10.0zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A2S3H5A10.0A0A2S3H5A1_9POAL; Uncharacterized protein
STRINGPavir.Ba00179.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37592222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.14e-19B-box type zinc finger protein with CCT domain