PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04958.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 948aa    MW: 104060 Da    PI: 7.0359
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04958.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.2e-19361460198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++
  Pahal.B04958.1 361 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGGK 453
                     99**************************555567778***************9989999999***9.********************887.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  Pahal.B04958.1 454 LVMGFRK 460
                     7877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-31353470IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-21358461IPR015300DNA-binding pseudobarrel domain
CDDcd100176.23E-24359460No hitNo description
SMARTSM010191.5E-22361461IPR003340B3 DNA binding domain
PfamPF023624.8E-16361460IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589361462IPR003340B3 DNA binding domain
PROSITE profilePS5105014.821622672IPR011124Zinc finger, CW-type
PfamPF074964.3E-12627669IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 948 aa     Download sequence    Send to blast
MAMAAAAVAK RCMNPACGAP ATGGGGDWRK GWPLRSGGFA LLCDKCGLAY EQFIFCDIFH  60
QKESGWRDCS FCGKRLHCGC VASKNSYDLL DSGGVQCVTC MKNSAAQSAS GQVVPKFFQC  120
QNNLRIFGKS DELLSGRKFE QSPSLVLDSR NDDLSIVNKS NHPFMVKSIE VGQSSSILRQ  180
KEIENGSRQI KWEQPTLSIG DMGKPFLTRS QSALESPQCT RRDDNKDPTT DSTTSESISE  240
ACLSMSLGIS NNGSKMEATS TVERPILSPT TAIAEGRELT TALSPFQHAQ RARHFLTRPP  300
RIGEGSVFDP TRDIFPHLRV ARPPAEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL  360
FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGRPLTI QDARGKEWHF QFRFWPNNNS  420
RMYVLEGVTP CIQSLQLQAG DTVTFSRIEP GGKLVMGFRK ATNTVSLPDS QISAIANGSL  480
LSETLFSSAN DNLGVVSGYP GFLQSIKGAA DLHPSSLYDH HVNSADGDVS WLKADKFGSR  540
PDEGSLQFLQ KRSRNIGSKS RRFLMDAEDA MELKLTWEEA QELLRPAPSA KSTIVMIEDY  600
EFEEYDEPPV FAKRSIFTIR ATGEQDQWIQ CDDCSKWRRL PLTVIIASKW TCADNSWDPK  660
SCSCSAPEEL TPKELQSVLQ QYEEMRRGKG SYGLKLNVAE MDASNLDALA AAAVFGDVGN  720
QGTASVATTT KHPRHRPGCT CIVCIQPPSG KGPKHNPSCT CNVCMTVRRR FKTLMMRKKQ  780
RQSEREEAEA SKKIAWVNRD EPEGSNLSRS PQTLDTTRDS SDVTMFDKAA DMNKGHIDLN  840
FHPAVRDDHQ GQHGTQQPRP VAVSMMGLME VASRPLDNYM KQNGLTSLGG EQGGGSSSTA  900
TVPPAPVESE ERTSNEVRVA SVEREREPAD AMAVDQQEKA ADDAAAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-673394632126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1767778RRRFKTLMMRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0629270.0BT062927.1 Zea mays full-length cDNA clone ZM_BFc0008I17 mRNA, complete cds.
GenBankJX4285020.0JX428502.1 Zea mays subsp. mays clone pUT3100 ABI32 ABI3VP1 type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799970.10.0B3 domain-containing protein Os07g0679700
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2S3H4Z00.0A0A2S3H4Z0_9POAL; Uncharacterized protein
STRINGPavir.Bb03754.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-170HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]