PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04961.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 350aa    MW: 35901.4 Da    PI: 6.5932
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04961.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.37.2e-24130192159
                     ---SS-EEEEEEE--TT-S.S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg +WrKYGqK++++s+ +prsYYrCt++   gC+++++v+ s+++p+ ++i Y g+H+++
  Pahal.B04961.1 130 LDDGNSWRKYGQKHIQDSPnNPRSYYRCTHKpdqGCKATRQVQASDDNPSEFVINYFGQHTCR 192
                     58***************9736*********9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-24118194IPR003657WRKY domain
SuperFamilySSF1182906.93E-23124194IPR003657WRKY domain
PROSITE profilePS5081119.772125194IPR003657WRKY domain
SMARTSM007744.6E-33130193IPR003657WRKY domain
PfamPF031061.8E-22131192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MASSASGGAA DGGGRSSPPA AEAPRAVVDN LIDLRERAEM LRNMLQGSPT PPGTPADAAP  60
GTSELIDGIM SSLSSALSAA LDTTAGGSHG QGRRRRRAGA VTGSGPQRRS STTRRRSHSP  120
FLRTVTTSTL DDGNSWRKYG QKHIQDSPNN PRSYYRCTHK PDQGCKATRQ VQASDDNPSE  180
FVINYFGQHT CRDPSTIPLV IEAAAPPDDC ANLISFGSTM GASTTTHAVP PQRPQAFDPA  240
MFVSRLVGHS SSLPAQDYYR CGSEEVHSSS SAPAGELAAV VGSAGMASSA TVVGSAPAEC  300
WPGGTGGGDM ACGHGAGSFP SSPSSLGFMT GSFGSFGNAG EDDMFGFDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-24124192269OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586330.0KU058633.1 UNVERIFIED: Panicum miliaceum WRKY31-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802431.10.0uncharacterized protein LOC112881781
TrEMBLA0A2S3H5190.0A0A2S3H519_9POAL; Uncharacterized protein
STRINGPavir.Ba00227.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.17e-21WRKY DNA-binding protein 46