PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B04984.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 318aa MW: 34838.4 Da PI: 4.9914

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B04984.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.4	1.9e-55	17	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtd e+v +yL++k+ + ++++ vi++vd++k+ePwdLp+k+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++ Pahal.B04984.1 17 LPPGFRFHPTDAEVVLDYLTPKALDGTFSC-VVIADVDLNKTEPWDLPAKAKMGEKEWYFFCHKDRKYPTGMRTNRATASGYWKATGKDKEIYRG 110 79************************99.78***********99999************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +g lvg+kktLvfy+grap+gekt Wvmheyrle Pahal.B04984.1 111 RGVLVGMKKTLVFYTGRAPRGEKTPWVMHEYRLE 144 ******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-63	13	167	IPR003441	NAC domain
PROSITE profile	PS51005	57.586	17	167	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MSEVVMNPGE EEPRLVLPPG FRFHPTDAEV VLDYLTPKAL DGTFSCVVIA DVDLNKTEPW 60 DLPAKAKMGE KEWYFFCHKD RKYPTGMRTN RATASGYWKA TGKDKEIYRG RGVLVGMKKT 120 LVFYTGRAPR GEKTPWVMHE YRLEGKLPPN LPRSAKDEWA VCRVFNKDLA AKPGQMAPAA 180 GPEPTIPLDF DDIFGVPPLE DSEYAFEDLL DFKAGAGNSS SSDAAGMGGG GYQVKAEQQN 240 QQALQQGPIY FSLPAASNPG GYPHGAAEQA IRAHCRPEAP ALPSPAFAGD LSSRPYPEVD 300 DLLLDDGFID YSNMLKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	6	172	4	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	6	172	4	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	6	172	4	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	6	172	4	170	NO APICAL MERISTEM PROTEIN
4dul_A	1e-52	6	172	4	170	NAC domain-containing protein 19
4dul_B	1e-52	6	172	4	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP096183	1e-171	FP096183.1 Phyllostachys edulis cDNA clone: bphyem213g04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804669.1	0.0	NAC domain-containing protein 87-like
Swissprot	Q9FK44	5e-84	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A2S3H4Z9	0.0	A0A2S3H4Z9_9POAL; Uncharacterized protein
STRING	Pavir.Ba00246.1.p	1e-168	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	3e-86	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Pahal.B04984.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]