PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B04990.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 338aa MW: 37077.5 Da PI: 6.9065

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B04990.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.1	4.9e-34	43	97	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerFveav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl Pahal.B04990.1 43 KPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRIMGIPGLTLYHLKSHLQKYRL 97 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.759	40	100	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-32	41	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.31E-17	42	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-24	43	98	IPR006447	Myb domain, plants
Pfam	PF00249	8.5E-11	45	96	IPR001005	SANT/Myb domain
Pfam	PF14379	8.7E-25	142	188	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MYHQQQFHGH NQHLSLRSGI PPEKQFLLQG GGDAGLVLST DAKPRLKWTP ELHERFVEAV 60 HQLGGPDKAT PKTIMRIMGI PGLTLYHLKS HLQKYRLSKN LQAQANVGSA KNGSRTGTDK 120 PCEGNGSPAS HLNIEPQINR SMHISEALQM QIEVQRQLHE QLEVQRHLQL RIEAQGKYLQ 180 SVLEKAQEAL AKQSVDLDAG VLGEAAAAET QQLSELISRA SATKRVQLEH LHHQHLGGVG 240 DGSVDSCLTA CEGSQRDHDM LSIGLSPAPT PRGGYPFEAA RSGGNDRGGA STSYEEFLFL 300 EEPGRSSSDE QQELDLTINT RRPRHCEKID LNGSSWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-20	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-20	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-20	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-20	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HF679461	1e-157	HF679461.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB55 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803980.1	0.0	myb-related protein 1-like isoform X2
Swissprot	Q9FK47	2e-88	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A2S3H528	0.0	A0A2S3H528_9POAL; Uncharacterized protein
STRING	Pavir.Ba00251.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	3e-89	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.B04990.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]