PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00001.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 118aa    MW: 13705.4 Da    PI: 9.3687
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00001.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.23.2e-1874117242
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa 42 
                     dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v++++
  Pahal.C00001.1  74 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKD 117
                     8***************************99999********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-1762117IPR003657WRKY domain
SuperFamilySSF1182909.15E-1866117IPR003657WRKY domain
PROSITE profilePS5081115.12468118IPR003657WRKY domain
SMARTSM007741.2E-1573118IPR003657WRKY domain
PfamPF031063.5E-1874116IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
AAEFPQETSP LSLPLHQFSV LPPLLSFTIL AMALDSVPAY LSDLGSSHRA VRTQQQRIRK  60
DERTWTSDTY APYDDGHQWR KYGEKKLSNS NFPRFYYRCT YKNDMKCPAT KQVQQKDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586291e-177KU058629.1 UNVERIFIED: Panicum miliaceum WRKY20-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810265.12e-60probable WRKY transcription factor 46 isoform X1
RefseqXP_025827915.12e-60probable WRKY transcription factor 46 isoform X1
SwissprotQ9SHB59e-14WRK55_ARATH; WRKY transcription factor 55
TrEMBLA0A2T7E4I65e-59A0A2T7E4I6_9POAL; Uncharacterized protein
TrEMBLA0A2T8I7244e-59A0A2T8I724_9POAL; Uncharacterized protein
TrEMBLA0A2T8KGM75e-59A0A2T8KGM7_9POAL; Uncharacterized protein
STRINGPavir.J31578.1.p8e-59(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-16WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]