PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00007.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 313aa    MW: 34111.7 Da    PI: 6.8635
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00007.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY697e-22101162359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE..EEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv..veitYegeHnhe 59 
                     Dgy+WrKYGqK+++g+ ++rsYYrC  +   gCp+k+ v+r+++ + +   +++Y geH+++
  Pahal.C00007.1 101 DGYQWRKYGQKQIEGAMYARSYYRCIRSaeqGCPAKRTVQRNDDGGAApkYTVVYMGEHTCT 162
                     9************************766667************7665433789*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-2386162IPR003657WRKY domain
SuperFamilySSF1182901.83E-2095162IPR003657WRKY domain
SMARTSM007748.4E-2799163IPR003657WRKY domain
PROSITE profilePS5081117.546101142IPR003657WRKY domain
PfamPF031062.5E-23101161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTLGLQGDEL LAQLRDLLLP SPTIPTPFKV ESGGTGHPPA SCDGRRRRRR GSKRGRDDDN  60
GEQQHEEPPR HSCKTSSRKM KQRQKKMSST SSLVTSVPDF DGYQWRKYGQ KQIEGAMYAR  120
SYYRCIRSAE QGCPAKRTVQ RNDDGGAAPK YTVVYMGEHT CTANDSMEAP VILETAVPVT  180
STNNNKRPQN DDDTSAATSA GSYRSTTSTS TVTGIKSPAA ISDITYWSSS SASSDYVVDV  240
YDDCGLFGVH DSWAPATAAA SSLQEMEDYF TGPIRSPVHI AATADGWTID NFLLQLAASN  300
DQPLFPHFSL FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-1491161168OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449RRRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586320.0KU058632.1 UNVERIFIED: Panicum miliaceum WRKY30-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828062.10.0WRKY transcription factor 22-like isoform X1
TrEMBLA0A2S3IC470.0A0A2S3IC47_9POAL; Uncharacterized protein
STRINGSi010813m1e-95(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.13e-16WRKY DNA-binding protein 54