PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00007.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 312aa    MW: 34024.6 Da    PI: 6.8635
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00007.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY697e-22100161359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE..EEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv..veitYegeHnhe 59 
                     Dgy+WrKYGqK+++g+ ++rsYYrC  +   gCp+k+ v+r+++ + +   +++Y geH+++
  Pahal.C00007.2 100 DGYQWRKYGQKQIEGAMYARSYYRCIRSaeqGCPAKRTVQRNDDGGAApkYTVVYMGEHTCT 161
                     9************************766667************7665433789*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-2385161IPR003657WRKY domain
SuperFamilySSF1182901.83E-2094161IPR003657WRKY domain
SMARTSM007748.4E-2798162IPR003657WRKY domain
PfamPF031062.5E-23100160IPR003657WRKY domain
PROSITE profilePS5081117.546100141IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTLGLQGDEL LAQLRDLLLP SPTIPTPFKV ESGGTGHPPA SCDGRRRRRR GSKRGRDDDN  60
GEQQHEEPPR HSCKTSRKMK QRQKKMSSTS SLVTSVPDFD GYQWRKYGQK QIEGAMYARS  120
YYRCIRSAEQ GCPAKRTVQR NDDGGAAPKY TVVYMGEHTC TANDSMEAPV ILETAVPVTS  180
TNNNKRPQND DDTSAATSAG SYRSTTSTST VTGIKSPAAI SDITYWSSSS ASSDYVVDVY  240
DDCGLFGVHD SWAPATAAAS SLQEMEDYFT GPIRSPVHIA ATADGWTIDN FLLQLAASND  300
QPLFPHFSLF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-1490160168OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449RRRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586320.0KU058632.1 UNVERIFIED: Panicum miliaceum WRKY30-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828063.10.0probable WRKY transcription factor 69 isoform X2
TrEMBLA0A2S3IC410.0A0A2S3IC41_9POAL; Uncharacterized protein
STRINGSi010813m2e-96(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.13e-16WRKY DNA-binding protein 54