PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00007.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 311aa    MW: 33937.5 Da    PI: 6.8635
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00007.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY697e-2299160359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE..EEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv..veitYegeHnhe 59 
                     Dgy+WrKYGqK+++g+ ++rsYYrC  +   gCp+k+ v+r+++ + +   +++Y geH+++
  Pahal.C00007.3  99 DGYQWRKYGQKQIEGAMYARSYYRCIRSaeqGCPAKRTVQRNDDGGAApkYTVVYMGEHTCT 160
                     9************************766667************7665433789*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-2384160IPR003657WRKY domain
SuperFamilySSF1182901.7E-2092160IPR003657WRKY domain
SMARTSM007748.4E-2797161IPR003657WRKY domain
PROSITE profilePS5081117.54699140IPR003657WRKY domain
PfamPF031062.5E-2399159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTLGLQGDEL LAQLRDLLLP SPTIPTPFKV ESGGTGHPPA SCDGRRRRRR GSKRGRDDDN  60
GEQQHEEPPR HSCKTRKMKQ RQKKMSSTSS LVTSVPDFDG YQWRKYGQKQ IEGAMYARSY  120
YRCIRSAEQG CPAKRTVQRN DDGGAAPKYT VVYMGEHTCT ANDSMEAPVI LETAVPVTST  180
NNNKRPQNDD DTSAATSAGS YRSTTSTSTV TGIKSPAAIS DITYWSSSSA SSDYVVDVYD  240
DCGLFGVHDS WAPATAAASS LQEMEDYFTG PIRSPVHIAA TADGWTIDNF LLQLAASNDQ  300
PLFPHFSLFS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-1489159168OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449RRRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586320.0KU058632.1 UNVERIFIED: Panicum miliaceum WRKY30-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828064.10.0probable WRKY transcription factor 69 isoform X3
TrEMBLA0A2S3IC330.0A0A2S3IC33_9POAL; Uncharacterized protein
STRINGSi010813m3e-96(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.11e-15WRKY DNA-binding protein 54