PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00012.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 246aa    MW: 26534.4 Da    PI: 5.4221
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00012.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.5e-1972121255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr ++ +g+++AeIrdp     +  kr++lg+f+taeeAa+ ++aa+ +l+g
  Pahal.C00012.1  72 QFRGVRHRP-WGKFAAEIRDP-----NvgKRVWLGTFDTAEEAAAVYDAAAIRLRG 121
                     69****888.**********9.....445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.9E-3071129IPR001471AP2/ERF domain
SMARTSM003808.7E-3772135IPR001471AP2/ERF domain
PROSITE profilePS5103223.22272129IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2172130IPR016177DNA-binding domain
PRINTSPR003678.8E-107384IPR001471AP2/ERF domain
PfamPF008472.7E-1173121IPR001471AP2/ERF domain
CDDcd000183.17E-1679129No hitNo description
PRINTSPR003678.8E-1095111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDAPGRVVRA HFADAVDATD SDSDDGRRRI VRVIDLLPPS ARAAPQRKKL VHYPSNDRPG  60
GERQGQGRGR RQFRGVRHRP WGKFAAEIRD PNVGKRVWLG TFDTAEEAAA VYDAAAIRLR  120
GRRAVTNFPL PSSSATLSSC AVSPAPSPMT STTIIPTTPP VGSSEAESSS ASPPSTQSSS  180
VVDADEDVTR MRWCEDEPFE SIEFYLPPVP TGGQCEFGDL GDLDDLFSPE PEPASRNFPG  240
GNFRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2371134468ATERF1
3gcc_A6e-2371134468ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828366.11e-176pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A2S3IC591e-175A0A2S3IC59_9POAL; Uncharacterized protein
STRINGPavir.J11205.1.p3e-92(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-12ethylene responsive element binding factor 5