PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00157.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 334aa    MW: 36025.3 Da    PI: 6.3378
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00157.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.94.2e-23136197259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                     +Dgy+WrKYG K+++g+ f+rsY+rCt++   gC ++k+v+++ ++dp v+++tY+++H+++
  Pahal.C00157.1 136 EDGYEWRKYGEKKINGTSFTRSYFRCTYKddtGCLATKHVQQKdSSDPPVFQVTYNNKHTCN 197
                     7***************************99999*******875268**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182905.36E-21131197IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-23131197IPR003657WRKY domain
SMARTSM007741.2E-32135198IPR003657WRKY domain
PROSITE profilePS5081118.119136199IPR003657WRKY domain
PfamPF031062.2E-24136196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDCCVAADRE HAVEVVAQVY ERIKIQQPLL LVHCSSLPPS ATTQLAQSLL SEALRALNVA  60
LSVMNQQPSP APATPTSVVV KAERQLLSSS SPSHGAAPDP GEAIPSTARR GKRRRTTVEA  120
GGKTSSWAGL TSVPYEDGYE WRKYGEKKIN GTSFTRSYFR CTYKDDTGCL ATKHVQQKDS  180
SDPPVFQVTY NNKHTCNNSC TTTAANSSEK VISINPLIIN GHHRAAVNNV KQEEPPPVLP  240
PLVEASSALA FDQSFPIGMQ QLQQQPCGTA RDYHGRHTPS TTSSCISGDS CCDGYYSAGG  300
DMAPQMAAEE ASPGEDFLHD LELFLLCDSF KDY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827911.10.0WRKY transcription factor 55-like
TrEMBLA0A2S3ICS10.0A0A2S3ICS1_9POAL; Uncharacterized protein
STRINGPavir.Ca00178.1.p1e-125(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-16WRKY DNA-binding protein 70