PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C00160.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WRKY

Protein Properties

Length: 222aa MW: 24636.2 Da PI: 8.9464

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C00160.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	53.5	4.6e-17	43	100	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkvers.aedpkvveitYegeHnhe 59 dDg++WrKYG K+ +s+fpr Y+ +Cp++k+v+++ ++dp ++ +tY ++H+++ Pahal.C00160.2 43 DDGHQWRKYGEKKLSNSNFPRCTYKND-MKCPATKQVQQKdTRDPPLFSVTYFNHHTCS 100 8*****************9888854.48***876157************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.9E-18	32	100	IPR003657	WRKY domain
SuperFamily	SSF118290	3.79E-17	35	101	IPR003657	WRKY domain
PROSITE profile	PS50811	11.945	37	102	IPR003657	WRKY domain
SMART	SM00774	1.2E-27	42	101	IPR003657	WRKY domain
Pfam	PF03106	2.4E-20	43	99	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MALDSVPAYL SDLGSSHRAV RTQQQRIRKD ERTWTSDTYA PYDDGHQWRK YGEKKLSNSN 60 FPRCTYKNDM KCPATKQVQQ KDTRDPPLFS VTYFNHHTCS TSSNPMGSTR DTAAQSSSRK 120 AVSICFSPHT ASEQPAFLTS SAMPVSPNVH SFGANQQPER SPYASQFQWT DASSPSTSNS 180 QVQMEVDSFS AASASSSSRV ALPRTLLPIG QSRCIEYFHF L*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU058629	0.0	KU058629.1 UNVERIFIED: Panicum miliaceum WRKY20-like gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810266.1	1e-164	probable WRKY transcription factor 46 isoform X2
TrEMBL	A0A2T8KGL7	1e-163	A0A2T8KGL7_9POAL; Uncharacterized protein
STRING	Pavir.J31578.1.p	1e-138	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	2e-16	WRKY DNA-binding protein 55

Link Out ? help Back to Top
Phytozome	Pahal.C00160.2