PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00246.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 418aa    MW: 45894.3 Da    PI: 4.5985
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00246.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-1682142155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse...ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +    ++ k+ ++++lg ++t+e Aa+a++ a++k++g
  Pahal.C00246.1  82 SVYRGVTRHRWTGRFEAHLWDkHCLtslQNkKKgRQVYLGAYDTEEAAARAYDLAALKYWG 142
                     78*******************9988888445445*************************98 PP
2AP2574.8e-18185237156
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg+f+t eeAaka++ a+ +++g+
  Pahal.C00246.1 185 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 237
                     89****99**********99966...3.6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.16E-1282151No hitNo description
SuperFamilySSF541711.31E-1782151IPR016177DNA-binding domain
PfamPF008474.3E-1482142IPR001471AP2/ERF domain
PROSITE profilePS5103220.8983150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1783151IPR001471AP2/ERF domain
SMARTSM003802.9E-2883156IPR001471AP2/ERF domain
PRINTSPR003673.3E-68495IPR001471AP2/ERF domain
CDDcd000185.89E-26185246No hitNo description
PfamPF008471.6E-13185236IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-18185246IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.4E-19186244IPR001471AP2/ERF domain
PROSITE profilePS5103219.032186244IPR001471AP2/ERF domain
SMARTSM003803.2E-26186250IPR001471AP2/ERF domain
PRINTSPR003673.3E-6226246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MERRSPQPSP PPVSSPPSSS SSSSSSISIE EIPTRKRART QAKGADKPKR PRKEAPRQTQ  60
SKEDPADPAP NAAAAASGKR SSVYRGVTRH RWTGRFEAHL WDKHCLTSLQ NKKKGRQVYL  120
GAYDTEEAAA RAYDLAALKY WGPETVLNFP AEDYSGEMSE MEGASREEYL ASLRRRSSGF  180
SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTFDTQ EEAAKAYDLA AIEYRGANAV  240
TNFDISCYLD HPLLLAQLQQ EPQVVPALNQ EPQPDQSETT VQESDSSEAK TPDDVAEPDD  300
NAEPDANAQP GDNAEPLTVD AVIEESLWSP CMDYELDIMS RSNFGSSINL SEWFTDADFG  360
SDIGCLFDGC SAVDEGSKDG VGLADFSFFE EGDGKQKDVI SDMEEGIHPS TMISVCN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753PKRPRKE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381840.0BT038184.1 Zea mays full-length cDNA clone ZM_BFb0216H15 mRNA, complete cds.
GenBankKJ7269100.0KJ726910.1 Zea mays clone pUT3455 AP2-EREBP transcription factor (EREB85) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807914.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2S3H5G50.0A0A2S3H5G5_9POAL; Uncharacterized protein
STRINGSi026433m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-76AP2 family protein