PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00361.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 485aa    MW: 52843.3 Da    PI: 7.4834
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00361.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.43.6e-98454702374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     + lL++cA  v++g + +a+++L+++ +las d+  ++qRlaa+f+ ALa++l++ v++l++al ++++s  +     aa++ ++++ P++k+++
  Pahal.C00361.1  45 IGLLYQCAAEVAAGAFDRANHCLEQITQLASLDApHTLQRLAAVFADALARKLLNLVPGLSRALLSTANS-AEAHLIPAARRHLFDMLPFMKLAY 138
                     679*******************************99**************************99777776.345555578888************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLa.sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     lt+N+aIlea+ege+ vH++D++  +s+++QW+aL++aL   R+  +gpp+lRiT+v++     ke l +++  Lak Ae+l++pf+f++ v+ r
  Pahal.C00361.1 139 LTTNHAILEAMEGEKFVHVVDLSgpASNPVQWIALFHALRsLRSlrGGPPHLRITAVHD----GKEFLANMAGVLAKDAEALDIPFQFSA-VEAR 228
                     **********************87789************85677999************....9**************************.799* PP

            GRAS 186 ledleleeL....rvkp...gEalaVnlvlqlhrll..............................................desvsleserdev 227
                     l++l++++L    rv++   g     ++ l   ++                                               +++ + + +  ++
  Pahal.C00361.1 229 LDELDPDALrqllRVRRhvpG-----SSCLTPVQIIarsspssfcellerelntrlqlspdtssvvsslwpqspvlqaaaaaAQQRPAAAKLGSF 318
                     ****99999443333334432.....2222222222455567799999********************************996666666679*** PP

            GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerle 320
                     L++v+ lsPk++vv+e ea+hn++ Flerf eal+yy++lfd+le   +++    er+kvEr +lg+e++ vva egaer+erhe+l++W +r+e
  Pahal.C00361.1 319 LQAVRALSPKIMVVAEPEANHNAAAFLERFEEALNYYASLFDCLERASAAHRcaAERAKVERLVLGEEVRGVVAREGAERKERHERLAQWARRME 413
                     ********************************************6654444345***************************************** PP

            GRAS 321 eaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
                      aG++ v +s+  +++a+ ll+  ++ g y+v ++   ++++++W++rpL+svSaWr
  Pahal.C00361.1 414 GAGMERVGMSYGGMMEARKLLQSLGWGGsYEVVHDarGEAFFFCWHQRPLYSVSAWR 470
                     *************************55559998554256666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.72518447IPR005202Transcription factor GRAS
PfamPF035141.2E-9545470IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MDIFPEDTVS SATSSPASSL YSPSPHGYGS WVQELSHDQQ GVRLIGLLYQ CAAEVAAGAF  60
DRANHCLEQI TQLASLDAPH TLQRLAAVFA DALARKLLNL VPGLSRALLS TANSAEAHLI  120
PAARRHLFDM LPFMKLAYLT TNHAILEAME GEKFVHVVDL SGPASNPVQW IALFHALRSL  180
RSLRGGPPHL RITAVHDGKE FLANMAGVLA KDAEALDIPF QFSAVEARLD ELDPDALRQL  240
LRVRRHVPGS SCLTPVQIIA RSSPSSFCEL LERELNTRLQ LSPDTSSVVS SLWPQSPVLQ  300
AAAAAAQQRP AAAKLGSFLQ AVRALSPKIM VVAEPEANHN AAAFLERFEE ALNYYASLFD  360
CLERASAAHR CAAERAKVER LVLGEEVRGV VAREGAERKE RHERLAQWAR RMEGAGMERV  420
GMSYGGMMEA RKLLQSLGWG GSYEVVHDAR GEAFFFCWHQ RPLYSVSAWR PAAGRHSGGR  480
LGGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-35324716379Protein SCARECROW
5b3h_D3e-35324716379Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750390.0EU975039.1 Zea mays clone 465792 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827468.10.0scarecrow-like protein 3
TrEMBLA0A2T7E5030.0A0A2T7E503_9POAL; Uncharacterized protein
STRINGPavir.Cb02147.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.19e-92scarecrow-like 3