PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00460.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 204aa    MW: 21956.7 Da    PI: 9.7256
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00460.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.9e-11126188163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     eke kr rr   NRe+Ar   +R++a  +eL++kv+ L++eN++ kke +   +e+ +lk  +
  Pahal.C00460.1 126 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSSENETIKKEKDLVMEEYLSLKETN 188
                     89**********************************************************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.4E-13126190IPR004827Basic-leucine zipper domain
PfamPF001707.1E-10126189IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.151128191IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-6130186No hitNo description
SuperFamilySSF579592.01E-7130186No hitNo description
CDDcd147021.24E-11131181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSDDQQHGGG QRQCRRGITP DVELGAALAL ADMAGSSVGL GPAHERAQAK GKARPAVVQL  60
HTGAGAEEAM TDDEEMASTR LSLQLGRVGI QSSSCSSGSS AGRPSSRQPA PATHGPRPRH  120
MLTEAEKEAK RLRRVLANRE SARQTILRRQ AIRDELARKV ADLSSENETI KKEKDLVMEE  180
YLSLKETNKQ LKAQAHDLSL SLF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809461.11e-145light-inducible protein CPRF2-like
TrEMBLA0A2S3H5Z71e-143A0A2S3H5Z7_9POAL; Uncharacterized protein
TrEMBLA0A2T7E5991e-143A0A2T7E599_9POAL; Uncharacterized protein
STRINGPavir.Cb02058.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31653475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.14e-18bZIP family protein