PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00467.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 271aa    MW: 29564.1 Da    PI: 8.4203
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00467.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.14e-2937133186
                     EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k ltpsdv+k++rlv+pk++ae++           g  +e++  l +ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++
  Pahal.C00467.1  37 FEKPLTPSDVGKLNRLVIPKQHAERYfplggaggvggGDGSEKGLLLAFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVRFER 131
                     99**********************************9555568889************************************************6 PP

                     -S CS
              B3  85 dg 86 
                     ++
  Pahal.C00467.1 132 VR 133
                     64 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-3931156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-2934135IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-2735135No hitNo description
PROSITE profilePS5086312.99937149IPR003340B3 DNA binding domain
PfamPF023622.0E-2637133IPR003340B3 DNA binding domain
SMARTSM010197.6E-2337149IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAMHHLAQGH PQAWPWGVAM YTNLHYHQHQ YEREHLFEKP LTPSDVGKLN RLVIPKQHAE  60
RYFPLGGAGG VGGGDGSEKG LLLAFEDEAG KPWRFRYSYW TSSQSYVLTK GWSRYVKEKR  120
LDAGDVVRFE RVRGGLGVGD RLFIGCRRRG ESAAPAPTPP PPVRAPAPAL NAGEQQPWSP  180
MCYSTSGSSY PTSPASPYAY HSDMAHAGEA DAKSSGTPTA PSRKLRLFGV NLDCGPEPEP  240
ETEAATAMYG YMHPSPYAAV STVPNYWGSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-51321493113B3 domain-containing transcription factor NGA1
5os9_B4e-51321493113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804861.10.0B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI01e-124Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A2S3H5Z80.0A0A2S3H5Z8_9POAL; Uncharacterized protein
TrEMBLA0A2T7E5A80.0A0A2T7E5A8_9POAL; Uncharacterized protein
STRINGSi010849m1e-174(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-44B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]