PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00553.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 360aa    MW: 39202.3 Da    PI: 10.255
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00553.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.3e-16117151135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+ C +t+Tp+WR gp g+ tLCn+CG++ r  g+
  Pahal.C00553.1 117 CVDCDATETPQWRAGPTGPGTLCNSCGVRRRAAGE 151
                     *****************************998775 PP
2GATA47.42.6e-15246280135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C +++Tp WR+gp g+ tLCnaCG++y   +l
  Pahal.C00553.1 246 CDHCASSSTPKWREGPKGPHTLCNACGVRYSQGRL 280
                     9*****************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.438111165IPR000679Zinc finger, GATA-type
SMARTSM004012.4E-10111170IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.52E-11113157No hitNo description
CDDcd002024.26E-8116147No hitNo description
Gene3DG3DSA:3.30.50.102.4E-11116149IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440117142IPR000679Zinc finger, GATA-type
PfamPF003201.2E-12117150IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-11239293No hitNo description
SMARTSM004015.0E-10240290IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.978240275IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-13245277IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.79E-10246296No hitNo description
PfamPF003204.8E-13246279IPR000679Zinc finger, GATA-type
PROSITE patternPS003440246271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGGTLPTPSI SRRRQQETPF SDEPQPQPPG SGPSRSLPSA AACDMAGSGG AEGERDGRLA  60
YDAPAWTLLL AAVSRKKRSR RGPASSRSWA FRRPVPVPPP PEAKKPMARK ATRAGRCVDC  120
DATETPQWRA GPTGPGTLCN SCGVRRRAAG ERWGERRRPR RATARSVSDQ QPLQESRPIP  180
DPESPPDSQI CEQELAPAPK LVLVTSPPPA TESLPALGMA RTDPDSDQPS KKKKKPPAKT  240
NEDKLCDHCA SSSTPKWREG PKGPHTLCNA CGVRYSQGRL LPEYRPQVSP TFKCREHASL  300
HSEELELRRQ RKDKQQQPVK LMPLLLPRPL DHLASELPVG DIDDNSGVAA ANPTDERRR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805594.10.0biofilm regulator 1-like
TrEMBLA0A270R7M00.0A0A270R7M0_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.J06380.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-19GATA transcription factor 4