PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00591.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 165aa    MW: 18653.4 Da    PI: 9.9873
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00591.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-164188148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lv +++ +G g+W++ ++ + + R++k+c++rw +yl
   Pahal.C00591.1 41 KGAWTMEEDQRLVAYIRAHGEGSWRSLPKAVSLQRCGKSCRLRWINYL 88
                     79********************************************97 PP
2Myb_DNA-binding56.37.5e-1894138147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEd+++++++ +lG++ W+ Ia +++ gRt++++k++w+++
   Pahal.C00591.1  94 RGNFTEEEDDIIIKLHGLLGNK-WSQIAGRLP-GRTDNEIKNYWNTH 138
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-243291IPR009057Homeodomain-like
PROSITE profilePS5129415.9733688IPR017930Myb domain
SuperFamilySSF466891.08E-3040135IPR009057Homeodomain-like
SMARTSM007171.7E-104090IPR001005SANT/Myb domain
PfamPF002492.5E-144188IPR001005SANT/Myb domain
CDDcd001671.00E-84388No hitNo description
PROSITE profilePS5129428.37789143IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2892143IPR009057Homeodomain-like
SMARTSM007175.9E-1793141IPR001005SANT/Myb domain
PfamPF002494.1E-1694138IPR001005SANT/Myb domain
CDDcd001675.42E-1296139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MRLYPPLLRG MLTSTGLAKC CDRETSDMGR SPCCEKAHTN KGAWTMEEDQ RLVAYIRAHG  60
EGSWRSLPKA VSLQRCGKSC RLRWINYLRP DLKRGNFTEE EDDIIIKLHG LLGNKWSQIA  120
GRLPGRTDNE IKNYWNTHIK RKLLARGIDP QTHRALAASS STCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-32411437108B-MYB
1h8a_C1e-314014326128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0696561e-118BT069656.1 Zea mays full-length cDNA clone ZM_BFb0205E08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807182.11e-98myb-related protein 330-like
SwissprotP813931e-82MYB08_ANTMA; Myb-related protein 308
SwissprotP813952e-82MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A2T8KH863e-97A0A2T8KH86_9POAL; Uncharacterized protein
STRINGPavir.J00442.1.p1e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-84myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]