PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00649.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 257aa    MW: 27668.8 Da    PI: 10.3376
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00649.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-172368147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
   Pahal.C00649.1 23 RGHWRPGEDEKLRQLVEQYGPQNWNSIAAKLD-GRSGKSCRLRWFNQ 68
                     899*****************************.***********996 PP
2Myb_DNA-binding54.92e-1777119347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ E+e+l++a++ +G++ W++I+r ++ gRt++ +k++w+ +
   Pahal.C00649.1  77 PFTAAEEERLLQAHRAHGNR-WALISRLFP-GRTDNAVKNHWHVV 119
                      79******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4111869IPR017930Myb domain
SuperFamilySSF466891.68E-2921116IPR009057Homeodomain-like
SMARTSM007171.2E-132271IPR001005SANT/Myb domain
PfamPF002492.0E-162368IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-262476IPR009057Homeodomain-like
CDDcd001676.23E-142667No hitNo description
PROSITE profilePS5129424.21370124IPR017930Myb domain
SMARTSM007171.3E-1474122IPR001005SANT/Myb domain
PfamPF002491.8E-1477118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2077122IPR009057Homeodomain-like
CDDcd001672.05E-1277120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAPSSTTTTS DKANSRSPSS CPRGHWRPGE DEKLRQLVEQ YGPQNWNSIA AKLDGRSGKS  60
CRLRWFNQLD PRINQRPFTA AEEERLLQAH RAHGNRWALI SRLFPGRTDN AVKNHWHVVM  120
ARRRRSHQRS AGTLLAASAT GCSPPPRRPP FQCFHFGAPP ASAKTTTGNL CFATPGSGPS  180
SLISSSSGTF SVRNCHVPIN VAFSSPSEAA AAPDDHRHGM GKDEHGAGGN DDDEDGGAAA  240
AKRKDVPFID FLGVGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-30231234104C-Myb DNA-Binding Domain
1msf_C1e-30231234104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129RRSHQRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9724981e-115EU972498.1 Zea mays clone 382267 myb-like DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809406.10.0transcription factor CSA-like
TrEMBLA0A2T8KH590.0A0A2T8KH59_9POAL; Uncharacterized protein
STRINGPavir.Cb01957.1.p1e-142(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.16e-62myb domain protein 52