PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C00693.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 426aa MW: 47459.4 Da PI: 5.8105

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C00693.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	73.3	3.6e-23	24	122	3	98
NF-YC 3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 + fw k+ ie +df ++++P++ ++k++ a++ m++ ++P +l+kace+f+ el++r+w++a++ +r+ + sdia+++ + d +dfl d Pahal.C00693.1 24 EEFWRKKqheIEAIKDFGERTIPMTHLRKVICAEKGKMMMTFDTPSFLTKACEIFVQELSFRAWMRAKSHQRSIILDSDIAESILSIDSYDFLND 118 679988767899*********************************************************************************** PP NF-YC 95 ivpr 98 + + Pahal.C00693.1 119 VTKK 122 9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.4E-5	44	104	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.6E-14	46	119	IPR009072	Histone-fold
SuperFamily	SSF47113	6.29E-12	58	121	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MNHLVNICTS TRTPISFSEQ QMVEEFWRKK QHEIEAIKDF GERTIPMTHL RKVICAEKGK 60 MMMTFDTPSF LTKACEIFVQ ELSFRAWMRA KSHQRSIILD SDIAESILSI DSYDFLNDVT 120 KKSFHIKFTN QPSTSSQPHF DQYSTKQFIP QSTDHSPTVH IPPHLAATNI YQMPIPVLLP 180 PQEHLLTATT TVTPTSIMSE MIPPVTCTTR GLEFFGNNIV ATFGAMTSLQ VPPEALANIQ 240 NNNNMSTVTN TCFVSNPNTS NVNAQDGGVT LHYPCAHQIS FQLSSPSPLT NSGAHISTGI 300 AELKHRRQDF AHIKNTSHGE ESDISNHQNI VHGKLDAEVI ATTNMSKGKN NNINWDEIDM 360 ADDSLLARFW EDIMMDEDLA HASAATSTND LVLLPFDILQ HDGFGHELNL LDDIVSIAST 420 GERHS*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MNHLVNICTS TRTPISFSEQ QMVEEFWRKK QHEIEAIKDF GERTIPMTHL RKVICAEKGK  60
MMMTFDTPSF LTKACEIFVQ ELSFRAWMRA KSHQRSIILD SDIAESILSI DSYDFLNDVT  120
KKSFHIKFTN QPSTSSQPHF DQYSTKQFIP QSTDHSPTVH IPPHLAATNI YQMPIPVLLP  180
PQEHLLTATT TVTPTSIMSE MIPPVTCTTR GLEFFGNNIV ATFGAMTSLQ VPPEALANIQ  240
NNNNMSTVTN TCFVSNPNTS NVNAQDGGVT LHYPCAHQIS FQLSSPSPLT NSGAHISTGI  300
AELKHRRQDF AHIKNTSHGE ESDISNHQNI VHGKLDAEVI ATTNMSKGKN NNINWDEIDM  360
ADDSLLARFW EDIMMDEDLA HASAATSTND LVLLPFDILQ HDGFGHELNL LDDIVSIAST  420
GERHS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002445118.1	1e-118	uncharacterized protein LOC8069654
Refseq	XP_022684300.1	1e-118	uncharacterized protein LOC111257969
TrEMBL	A0A2T7E605	0.0	A0A2T7E605_9POAL; Uncharacterized protein
STRING	Pavir.Ca00329.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9174	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	5e-19	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Pahal.C00693.1