PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C00694.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 403aa MW: 44742.9 Da PI: 6.9101

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C00694.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	74.4	1.7e-23	28	127	4	100
NF-YC 4 sfwekqieka...tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 fw+k+ e+a +df++ ++P++r+kk+l a + m+ ++P++l+kace+f+ el++r+w+ a++ +r+ + sdia+a+t+ + f fl di Pahal.C00694.1 28 EFWKKKQEEAkaiKDFHEYAFPMSRLKKVLCAKKGKIMMRFDTPTFLTKACEIFVQELSFRAWMCANSHQRKIILDSDIAEAITSIKSFGFLNDI 122 5999866541126888999*************************************************************************9 PP NF-YC 96 vprde 100 +d+ Pahal.C00694.1 123 LHTDQ 127 98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00125	4.8E-10	11	110	IPR007125	Histone H2A/H2B/H3
SuperFamily	SSF47113	3.49E-15	32	127	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.8E-17	48	123	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MKEMDHPIDT HPSSKKSLLE SEQRLKVEFW KKKQEEAKAI KDFHEYAFPM SRLKKVLCAK 60 KGKIMMRFDT PTFLTKACEI FVQELSFRAW MCANSHQRKI ILDSDIAEAI TSIKSFGFLN 120 DILHTDQEKH NSTPLLKSTK MRNHSLINKS STSHLISSNQ YKKLQSIPLS TGYSPNVCIS 180 SPLPLTDDCP MTLPLPCLLQ EACPLMPTTI TPPPTVSETN ATLVPPRAQP NIPNTCYMST 240 IASTSSYCVG YASTSNVRAQ DRGAAYYHIP SSSLQFSPPS QIANNSGPIA IGIIESNHIN 300 PKVAQIRSDI HAHSTTNAIS GINLEATINS NDVQHQHGSL EVVSATKLSG DNKNINWDEV 360 DMADDSLLIE FWEDIMMNED ITPQEISSHM PELKGSWTVS SR*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MKEMDHPIDT HPSSKKSLLE SEQRLKVEFW KKKQEEAKAI KDFHEYAFPM SRLKKVLCAK  60
KGKIMMRFDT PTFLTKACEI FVQELSFRAW MCANSHQRKI ILDSDIAEAI TSIKSFGFLN  120
DILHTDQEKH NSTPLLKSTK MRNHSLINKS STSHLISSNQ YKKLQSIPLS TGYSPNVCIS  180
SPLPLTDDCP MTLPLPCLLQ EACPLMPTTI TPPPTVSETN ATLVPPRAQP NIPNTCYMST  240
IASTSSYCVG YASTSNVRAQ DRGAAYYHIP SSSLQFSPPS QIANNSGPIA IGIIESNHIN  300
PKVAQIRSDI HAHSTTNAIS GINLEATINS NDVQHQHGSL EVVSATKLSG DNKNINWDEV  360
DMADDSLLIE FWEDIMMNED ITPQEISSHM PELKGSWTVS SR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022684300.1	1e-141	uncharacterized protein LOC111257969
TrEMBL	A0A2T7E611	0.0	A0A2T7E611_9POAL; Uncharacterized protein
STRING	Pavir.Cb01904.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9174	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	6e-20	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Pahal.C00694.1