PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00854.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 273aa    MW: 30808.7 Da    PI: 7.4097
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00854.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.34e-20132195259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS...STTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae...dpkvveitYegeHnhe 59 
                      Dg++WrKYGqK++k+s + rsYYrCt++   +C+++k v+++++   +p + +++Y g+H+++
  Pahal.C00854.1 132 YDGHQWRKYGQKNIKNSMHQRSYYRCTYKheqNCMATKTVQQQEHnttEPGMYTVVYYGHHTCK 195
                     59**************************9999********98765111678***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.27E-21126195IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-22127195IPR003657WRKY domain
SMARTSM007741.3E-32131196IPR003657WRKY domain
PfamPF031061.9E-23133195IPR003657WRKY domain
PROSITE profilePS5081115.376133197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKLHTRYLPQ SSSTCADEFK RFACDHQPAI NEIVKVQSLV AQLRAIVLPA CEMMADLRSE  60
LVSQLFGSLQ DCTSHAISEL QTHHSAQLID IDRRGSAVNI SDCKKVCAKK KSRINSGRYG  120
DSTSYRTPVP HYDGHQWRKY GQKNIKNSMH QRSYYRCTYK HEQNCMATKT VQQQEHNTTE  180
PGMYTVVYYG HHTCKANTGP APPHVIETST PQSAMSSDSI IGSQEIVSPH TGSHKILENE  240
HATLQWTEDM QGLLEKIADV PLDSDIWEMD RF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-141331951069OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00066PBMTransfer from AT1G66600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805693.10.0probable WRKY transcription factor 63
TrEMBLA0A2T7E6J30.0A0A2T7E6J3_9POAL; Uncharacterized protein
STRINGPavir.Ca00459.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.15e-22ABA overly sensitive mutant 3