PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C00870.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 223aa MW: 23069.2 Da PI: 5.9556

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C00870.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00026	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Pahal.C00870.1 59 YECVFCKRGFTTAQALGGHMNIH 81 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.61E-6	57	85	No hit	No description
PROSITE profile	PS50157	10.99	59	86	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MDSGSNMESK AAASGDEAMT SPGPDSAAAA GGAGEEEVAG EEAAASPPAP AAASPRPYYE 60 CVFCKRGFTT AQALGGHMNI HRRDRAKPPA RDSPTGITSV SRNVECYNKY RHLVSPYPPA 120 QSSSIPVGAG SSFGMYYVSS GAEAAAGARL DAEGGSPSSV SPRELSLFGE ANRDQDLHLG 180 LGRQGHIGGG SRTPEGGSER QQSSEPEREL DLELRLGRRP RH*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC145477	5e-38	AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBank	AP014961	5e-38	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805746.1	1e-158	uncharacterized protein LOC112884551
TrEMBL	A0A2S3H6V7	1e-157	A0A2S3H6V7_9POAL; Uncharacterized protein
TrEMBL	A0A2T7E6L4	1e-157	A0A2T7E6L4_9POAL; Uncharacterized protein
STRING	Pavir.J09457.1.p	1e-109	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8111	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	5e-14	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pahal.C00870.1