PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00887.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 225aa    MW: 24296.6 Da    PI: 9.9745
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00887.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81.1e-121456346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +W++ Ed  l + v+++G  +W+++++ ++ gR++ +c++rw++
   Pahal.C00887.1 14 SWSKGEDTVLREQVRLHGEQSWERVSAALP-GRSARSCRLRWYQ 56
                     7*****************************.***********97 PP
2Myb_DNA-binding46.77.2e-1567110348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++++eEd l+v +++ ++++ W+tIar ++ gRt+ ++ksr++++l
   Pahal.C00887.1  67 PFSAEEDALIVACHRAYPNK-WATIARFLP-GRTDSDVKSRYNTVL 110
                      79******************.*********.************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.164762IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-14962IPR009057Homeodomain-like
SuperFamilySSF466891.1E-2310106IPR009057Homeodomain-like
SMARTSM007179.5E-101160IPR001005SANT/Myb domain
PfamPF002498.0E-121456IPR001005SANT/Myb domain
CDDcd001671.96E-111458No hitNo description
PROSITE profilePS5129416.55464114IPR017930Myb domain
SMARTSM007172.2E-1364112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-1666114IPR009057Homeodomain-like
PfamPF002494.5E-1267110IPR001005SANT/Myb domain
CDDcd001679.80E-1267110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDMDTPMAAK KSSSWSKGED TVLREQVRLH GEQSWERVSA ALPGRSARSC RLRWYQRLAH  60
AVAAGRPFSA EEDALIVACH RAYPNKWATI ARFLPGRTDS DVKSRYNTVL REQLDLAPPP  120
RRHPDGTLPL FPLVPGDVRR ASGRGGTVLR RQPPEEAAGD DQSGACLALF PLAPGDLTKG  180
SNSAREAAAM DFDVSAGGLP EMRLSPAPTA MAAFRAMVQA VRAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-201511510109B-MYB
3osf_A8e-2071096106MYB21
3osf_D8e-2071096106MYB21
3osg_A8e-2071096106MYB21
3osg_D8e-2071096106MYB21
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805748.11e-156transcription factor MYB44-like
TrEMBLA0A2T8KHG91e-155A0A2T8KHG9_9POAL; Uncharacterized protein
STRINGSi024031m5e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-27myb domain protein 77