PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01043.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 372aa    MW: 42049.3 Da    PI: 8.4428
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01043.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS154.87.5e-48702292162
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     + lL++cA+a++s+ +   ++lL+++++++sp+gd  qRla yf+ AL+ar a+++s++y++l +++++   +++ l+a++lf  ++P+ ++++ 
  Pahal.C01043.1  70 KALLIQCAQAIASNTQPFDRELLTKIRNHSSPYGDGSQRLANYFVDALEARAAGTGSQMYQKLMAKRKN---TTDMLKAYRLFIAACPFANVAYY 161
                     689*********************************************************999988887...89********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetg 162
                       Nq+I++ + g+ +vHiiDf+i+ G+QWp+L+q +a+R++gpp+lRiTg++ pe+g    +++eetg
  Pahal.C01043.1 162 YSNQTIVDVLVGQPTVHIIDFGITFGFQWPSLIQRFANREGGPPNLRITGIDVPEPGfrLCKKIEETG 229
                     *****************************************************998776555566655 PP
2GRAS109.64.2e-34231371232371
            GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                     k+++P+v+++   +  +ns+ Fl rf e l +ys+lfd+++++++r +e+ri +Er llg ++ nvvacegaer+e+ e++++W++r+ +aGFk+
  Pahal.C01043.1 231 KRMNPEVLIIGVVNGLYNSPFFLPRFREVLFCYSSLFDMINSTVARSHEARILIERDLLGADVFNVVACEGAERIEKPESYKQWQARILKAGFKQ 325
                     89********************************************************************************************* PP

            GRAS 327 vplsekaakqa..klllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                     +p+++++ k    ++  + +  + + v+e+sg+l++gWk+r + ++S
  Pahal.C01043.1 326 LPVNQTILKGSiiERKKELY-HEDFVVDEDSGWLLQGWKGRIMHALS 371
                     *******9875114444444.577*****************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.85543371IPR005202Transcription factor GRAS
PfamPF035142.6E-4570229IPR005202Transcription factor GRAS
PfamPF035141.4E-31231371IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MNLELLDARN SKHLAISCSE TIRDETFDSV LLCTGQLYYD AAHLREMKEK EARDSSQIAQ  60
SKKYGQGQLK ALLIQCAQAI ASNTQPFDRE LLTKIRNHSS PYGDGSQRLA NYFVDALEAR  120
AAGTGSQMYQ KLMAKRKNTT DMLKAYRLFI AACPFANVAY YYSNQTIVDV LVGQPTVHII  180
DFGITFGFQW PSLIQRFANR EGGPPNLRIT GIDVPEPGFR LCKKIEETGT KRMNPEVLII  240
GVVNGLYNSP FFLPRFREVL FCYSSLFDMI NSTVARSHEA RILIERDLLG ADVFNVVACE  300
GAERIEKPES YKQWQARILK AGFKQLPVNQ TILKGSIIER KKELYHEDFV VDEDSGWLLQ  360
GWKGRIMHAL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-347536325368Protein SCARECROW
5b3h_A4e-347536324367Protein SCARECROW
5b3h_D4e-347536324367Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680798.10.0scarecrow-like protein 9
TrEMBLA0A2T8KHK50.0A0A2T8KHK5_9POAL; Uncharacterized protein
STRINGPavir.J13192.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.12e-91GRAS family protein