PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01141.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 262aa    MW: 27562.2 Da    PI: 7.5495
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01141.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-201776357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+++t+eql +Lee+++   r+psa+++++++++l    +++ ++V++WFqN++a++++
  Pahal.C01141.1 17 TRWCPTPEQLMILEEMYRGgLRTPSASQIQQITAHLacygRIEGKNVFYWFQNHKARDRQ 76
                    8*****************99*************************************996 PP
2Wus_type_Homeobox117.56.1e-381677364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +tRW+PtpeQ++iLee+y+ GlrtP++++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk
     Pahal.C01141.1 16 STRWCPTPEQLMILEEMYRGGLRTPSASQIQQITAHLACYGRIEGKNVFYWFQNHKARDRQK 77
                       79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.4E-41481IPR001356Homeobox domain
CDDcd000861.41E-51777No hitNo description
PfamPF000463.1E-181776IPR001356Homeobox domain
SuperFamilySSF466891.2E-101777IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-71876IPR009057Homeodomain-like
PROSITE profilePS500719.9442277IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MPSQQDQPQQ PVVAGSTRWC PTPEQLMILE EMYRGGLRTP SASQIQQITA HLACYGRIEG  60
KNVFYWFQNH KARDRQKLRR RLCMSHHLLS CAQYYAAAHH GHGHGFLAAP PAAPYGCSVF  120
DQAAASQLLS PTSPTPAAAA AAAAAAAAYG YYYPATAAFA AAPASRCAGA ATPPSPTQLF  180
HYQAGGGGIA PVEALGRPEY SLGKLDNFGV ALDDVVMSSA AAVDMGPPGF EVAPPPAAFC  240
RPLKTLDLFP GGLKEEQHDV A*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401841e-134BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269461e-134KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809937.10.0putative WUSCHEL-related homeobox 2
TrEMBLA0A2S3H7H40.0A0A2S3H7H4_9POAL; Uncharacterized protein
TrEMBLA0A2T7E7F40.0A0A2T7E7F4_9POAL; Uncharacterized protein
STRINGPavir.J22602.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.13e-40WOX family protein