PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C01159.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 213aa MW: 22095.1 Da PI: 6.4918

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C01159.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.7	8.7e-43	37	136	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C++ Cvlapyfp ++p+kfa +h++FGasn++kll++lpee+r da+ss+vyeA ar+rdPvyG++g i +lq+q++ lka+la Pahal.C01159.1 37 PCAACKILRRRCVDRCVLAPYFPPTEPHKFATAHRVFGASNIIKLLQELPEEHRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNDLKAQLA 131 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e Pahal.C01159.1 132 RAHAE 136 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.011	36	137	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-42	37	134	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MDSSSSDTAA TAALPPGGAS TPPTSPQPQQ PAVVLSPCAA CKILRRRCVD RCVLAPYFPP 60 TEPHKFATAH RVFGASNIIK LLQELPEEHR ADAVSSMVYE ASARIRDPVY GCAGAICQLQ 120 KQVNDLKAQL ARAHAELAGA RAQHAHLLAL LCVEVAAASS PAYCAVDYPS AQLAAAAPAA 180 QADALYVIDG GSGSGLQLQS SPVSWADEPL WT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-44	36	137	10	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-44	36	137	10	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809139.1	1e-151	LOB domain-containing protein 1-like
Swissprot	Q9SK08	3e-61	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A2S3H7K5	1e-150	A0A2S3H7K5_9POAL; Uncharacterized protein
STRING	Pavir.J04684.1.p	1e-119	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-53	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Pahal.C01159.1